Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0393 ATGGGAAGTGCACCATTACCGCCAGGTTTTCGTTTCCACCCAACAGACGAAGAACTGATAGGATATTATCTAAAGAGAAAAATAGAGGGGCTTGAAATAGAACTTGAGGTTATCCCAGTCATTGAATTGTACAAATTTGATCCATGGGAGTTGCCAGACAAATCATTCCTCCCAAAGAGAGATATGGAGTGGTTTTTCTTCTGTCCACGAGATCGAAAGTACCCAAATGGATCGCGAACAAATAGAGCTACCAAAACTGGGTACTGGAAAGCCACTGGAAAAGACAGAAATATAGAGTGTCAGTCAACCCCATTCACTGTTAAAGGATGTAGAAAGACTCTTGTTTTCTATCGTGGAAGAGCTCCACTTGGGGATCGAACTGAGTGGATCATGCATGAGTATCGACTCAACAATGACTCTGATCACTCATCTCCCAGTTTTCAGGGTGGTTTTGCCTTGTGTAGGGTGATGAAGAAGAATGAGAAGGTTAAGAGTTCGCAGGAAGAACAAAAAGGTAAGGTAGCAGGAAGCAGTTGCACCGGTGGGAATAAAGAAGCTTCAATGAAGACCTTTGGTGATGTATCGTCTCAATCAAGCCCCAACACTTCTTGTCCATACCATGTGGCTTCAACCATGGCAGAGCCTGAGCAAGCTTCTTCCTTGGAGTCCATCAACCCTTCACATTTTTATGTCTCGCCTGACTTGATTCTGGATTCTTCCAAGGACTACCCTCAAGTACAGGATGCCATGTCTGGATACTTTCCACAGTACGACTTATCATGTTCAATGAATCCATGGCAATCATTCCTACCAACAGAAAATTCAACCTCCTCATCTTACTCAAATGTAAATGGAGAAATTGAATTTGCTGAAGATCTCGATCAAGTTGGCTACTTCTATAGAAATGAAGATGTATCTCACGAAGGCTTTGATCATATCAATTCACTCAGATATCCAAAACCGTTCTGA 969 0.4241 MGSAPLPPGFRFHPTDEELIGYYLKRKIEGLEIELEVIPVIELYKFDPWELPDKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKTGYWKATGKDRNIECQSTPFTVKGCRKTLVFYRGRAPLGDRTEWIMHEYRLNNDSDHSSPSFQGGFALCRVMKKNEKVKSSQEEQKGKVAGSSCTGGNKEASMKTFGDVSSQSSPNTSCPYHVASTMAEPEQASSLESINPSHFYVSPDLILDSSKDYPQVQDAMSGYFPQYDLSCSMNPWQSFLPTENSTSSSYSNVNGEIEFAEDLDQVGYFYRNEDVSHEGFDHINSLRYPKPF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0393 322 MobiDBLite consensus disorder prediction 162 182 - -
Prci5g0393 322 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Prci5g0393 322 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Prci5g0393 322 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 216 - -
Prci5g0393 322 FunFam Nac domain-containing protein 86 15 162 - -
Prci5g0393 322 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Prci5g0393 322 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0393 Prci-Chr5 5279358 5281357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0393 1 314 NAC Transcription Factor Family AT4G17980 53.797 9.18e-105 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci5g0393 NAM 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0393 - - gmx:100796849 424.091