Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0389 ATGGGTTGCACTGTGAGGGAAAAGCACCTCCGAGCGAATCGGAGACCTCGATCATCCAAACCCTATATGGATTCCTGCTGTTATCTCGACAAGGCTCCCATTTCCAAATCTATACTGGAATCAAGCCTGAAGCCTGTGAGAAACCATCTTGCTCTCAACGATTCTTCTCAAAATCCAAATTCCAACTCTAATCCTACCCTTAACCCTAGTTTTTCCCTTAATGTTGAGGAAACCGGCTGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTGTTGAAAAACTTGGAACATTTATATAATGAAGCTGTATCGAAGCTTGTTGCATTGGGCTACGACGAGGACGTGGCTATCAAAGCAATATTGCGAAATGGGCACTGTTATGGTCGAATGGATGTGCTCACCAATATTTTACATAATTCGTTGGCTTATTTGGATAGTAACTGTGATTGTACCAGTACTAGTAGTAATGGCAATTCGGATGAGTCCGATCCTGTTTTCTCTGACTTGAGGCAGTTGGAGGAGTGCTCTCTGGCAGGCATGGTCTGTTTGCTGCAACAAGTCAGGCCACATTTGAGTAAAGGCGATGCCATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCATGTGCCATGGAAATTCCAGTGCTTCCTGCTTCAGGTAATGGTTGTCCAGATCCTAGTGCCTCTGAGGCTAGCAATTCAGTTGGTGTTTTGGCCCCTGCCCTGTGTAGGTTTCACGGGGGTTGGGGATTTGGAAACGGGGGAGGCTCAGATCTCCCCTTCAATGGGTTCTTCTCTTATAGCGCTGAGATGAATTTACGAAGAGATATTGAACTTCCAAAAAGGTTTAATCTTTCTCCTTCAATGAAGTCTTTACTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTTCAGACACAGGCCAAGGCCTCTCCCAGCAATAGCACTTTGCCAAGCTTGGAATCTCCAGCTGTATCAGGGACTGATGTCCCAACAGAGCAGTCTGGGGATTCTCAGAATCTGAATAACAATGATTCTGTGAACTCAGTGTTGAGCAAATTCCGTGATCTGAATCTTGATGAGAATCTGGAGTCTGTGACAGAAGATCAGAAAGATGAGGTGATAGTCACTTTATTTCGTCAGATTAAGGATCTTGAGAAACAGGTAAAAGAACGAAAAGATTGGGCCCATCAGAAGGCAATGCAGGCCGCAAGAAAGCTAAGCAATGATCTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCACTGGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATGCTTTAAGAAGGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGACAGCTTGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCAGTCATGACTTGCTTGCAAGCTGCAAAGAGGGAGAAAAAGTGCATGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCAAGAGATTTCAGGTGAGAAAGAGAAGATACTGGAGATGCAGGAAGAATTGGTTCAGATTAAACAGCGTCGGAAAGATGCTGAGGTCAAGTGGAGGAAAGAGTTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCGACGGGCTAAGGAAGCAGTGGAGGCTAAAAATAAGCGGAAGCTTGAGGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGGCACAAGGATGATCTCCTAAGACTTGAGCAGGAGCTTTCACGCTTAAAATCATCTGCTCAGTCTGCTGAGTTTCTAAATCAATCAAATACTTCACCTGCAAGCGAGTCTGAGAGTGCAAAGCCCCAAAGAGAGACAATTGCTAAGATGCTTCAAGAATTAGATAAACTGGAGGCATACTCAGATAAAGAAGTAAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGAGAAAGGGCAAAGCTGCCTGTCCATGCTGTTGTGTTCCAATTGAGCAGAGGATTCGTGTATTCGGGGCAAGTTCGTAG 2181 0.4448 MGCTVREKHLRANRRPRSSKPYMDSCCYLDKAPISKSILESSLKPVRNHLALNDSSQNPNSNSNPTLNPSFSLNVEETGWGYCTEEQLEEILLKNLEHLYNEAVSKLVALGYDEDVAIKAILRNGHCYGRMDVLTNILHNSLAYLDSNCDCTSTSSNGNSDESDPVFSDLRQLEECSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRACAMEIPVLPASGNGCPDPSASEASNSVGVLAPALCRFHGGWGFGNGGGSDLPFNGFFSYSAEMNLRRDIELPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQFQTQAKASPSNSTLPSLESPAVSGTDVPTEQSGDSQNLNNNDSVNSVLSKFRDLNLDENLESVTEDQKDEVIVTLFRQIKDLEKQVKERKDWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRRASGQVDRANAAVRQLETENAEIKAEMEASKLSASESVMTCLQAAKREKKCMKRLVAWEKQKAQLQQEISGEKEKILEMQEELVQIKQRRKDAEVKWRKELKAKEEALGLVEEERRAKEAVEAKNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKSSAQSAEFLNQSNTSPASESESAKPQRETIAKMLQELDKLEAYSDKEVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGRKGKAACPCCCVPIEQRIRVFGASS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0389 726 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Prci5g0389 726 PANTHER OS05G0141500 PROTEIN 1 721 IPR046934 -
Prci5g0389 726 SUPERFAMILY RING/U-box 660 718 - -
Prci5g0389 726 MobiDBLite consensus disorder prediction 625 642 - -
Prci5g0389 726 Coils Coil 508 556 - -
Prci5g0389 726 Coils Coil 564 591 - -
Prci5g0389 726 Coils Coil 600 627 - -
Prci5g0389 726 MobiDBLite consensus disorder prediction 314 356 - -
Prci5g0389 726 Coils Coil 452 493 - -
Prci5g0389 726 SMART ring_2 672 711 IPR001841 -
Prci5g0389 726 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g0389 726 Pfam Zinc finger, C3HC4 type (RING finger) 669 717 - -
Prci5g0389 726 MobiDBLite consensus disorder prediction 51 70 - -
Prci5g0389 726 ProSiteProfiles Zinc finger RING-type profile. 672 711 IPR001841 -
Prci5g0389 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 723 IPR013083 -
Prci5g0389 726 CDD RING-HC_MIP1-like 669 721 - -
Prci5g0389 726 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0389 Prci-Chr5 5262005 5266665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0389 672 722 C3H Transcription Factor Family AT1G73950 43.137 2.96e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0389 - - gmx:100797917 1063.14