Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0385 ATGCCAGTTCCACTTGCCCCTTACCCTACGCCTCCAGCTCCATATACGCCTCCAGCTAATGGAGCTACACAGCAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCAGTTTGCAATGCAGTCACTGCAGTGCCACCTCCTGGTACAGAAATGGCCCAGTTGGTTTGTGGAGCCTGCCACACCTTACTGATGTACATACGTGGGGCGACAAGCGTGCAATGCTCTTGCTGTCACACCGTGAATCTAGCTCTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGCAACTGTAGAATGCTACTGATGTACCAATACGGAGCAAGATCAGTTAAATGTGCAGTCTGCAATTTTGTAACATCAGTTGGGGTCTCAGCAAGCACAATTGAGCAGAAGTTCAGCAGCTAA 444 0.4955 MPVPLAPYPTPPAPYTPPANGATQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSASTIEQKFSS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0385 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Prci5g0385 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Prci5g0385 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Prci5g0385 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Prci5g0385 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Prci5g0385 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Prci5g0385 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0385 Prci-Chr5 5228763 5231461 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Prci5g0385 zf-LSD1 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0385 - - qsu:112000975 259.225