Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0379 ATGGATTCACGGGAACCGCCTCAGCCCCCGCAACCGCCGCAGCTACAGTCGATGGGACACCCTCAACCACTGCAAAACATGATGATGGGGCCCACTTCGTATGGTTCTGCCATGCCGAACCCGAACACATCTTCCATGATCAACCCCAATTCGACGGCCGCCATGATGGCCCCTGCCACCGCACGATTACCCTTCAACGCCGTGGTTCCGCAACCCCCTGCTCCGTCTAAACCTATGGAACATCCGAACAACAATGTTAGTCCTTACGATGGGTCATCGTCCGCGATGAGGCCGTGTGGGCTTAGTATGGATTCTACGAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCACCGGATGGTAACATTGCTTTGGGTTTGACTCCCACGCCCATGTCCTCTTCTGCTGGCCCGGGAGATTCAAGTGGTACACCTTCTACGGAGCCTGGAACGAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAGGCAGCTGGATGCTCTTGGAGCTGGCGGTATCGGCTTTACTCCGCACGTAATATTGGTAAAAGCTGGTGAGGACATTGCTGGAAAGATCGTGGCCTTTTCACAGCAAGGACCTAGGACAGTTTGTATTCTTTCTGCAATTGGTGCAATCAGCAATGTTACCCTTAGACAGGCAGCAATATCTGGTGGTACTGTGCAATATGAGGGCAGATTCGAGATTATATCTCTATCAGGTTCTTTCCTGCCATGTGAAGATAATGGTCGCAGCAGAGCAGGTGGTTTTAGCATCTCTCTTGCAGGTTCAGATGGTAAAGTTTTAGGTGGTGGAGTTGCTGGGATGCTAATTGCCGCATCACCGGTGCAGGTCATCGTGGGTAGCTTTATTGCTGATGGCAAAAAGTCAAACTCAAATATTCAGAAATCAGGGGCTTCTTCAGCACAAGCCCCTCAAATGTTAAATTTTGGTGCACCTGCGACTCCTACCAGCCCTACCTCTCATGGCCCTTCATCTGAGTCCTCTGATGAGAATGACAATAATAGTGATTTTAATAGGGGACCTGGACTCTACAATAATACTAACCAGCCCATTCACAATATGCAGATGTATCAACTATGGGCTGGTCAGACCCAGCAGTGA 1122 0.5071 MDSREPPQPPQPPQLQSMGHPQPLQNMMMGPTSYGSAMPNPNTSSMINPNSTAAMMAPATARLPFNAVVPQPPAPSKPMEHPNNNVSPYDGSSSAMRPCGLSMDSTKKKRGRPRKYSPDGNIALGLTPTPMSSSAGPGDSSGTPSTEPGTKKHRGRPPGSGKRQLDALGAGGIGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQAAISGGTVQYEGRFEIISLSGSFLPCEDNGRSRAGGFSISLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSNSNIQKSGASSAQAPQMLNFGAPATPTSPTSHGPSSESSDENDNNSDFNRGPGLYNNTNQPIHNMQMYQLWAGQTQQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0379 373 CDD DUF296 176 289 IPR005175 -
Prci5g0379 373 MobiDBLite consensus disorder prediction 1 53 - -
Prci5g0379 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 175 290 - -
Prci5g0379 373 ProSiteProfiles PPC domain profile profile. 171 311 IPR005175 -
Prci5g0379 373 MobiDBLite consensus disorder prediction 66 169 - -
Prci5g0379 373 Gene3D - 177 303 - -
Prci5g0379 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 69 343 IPR039605 GO:0003680
Prci5g0379 373 MobiDBLite consensus disorder prediction 1 17 - -
Prci5g0379 373 MobiDBLite consensus disorder prediction 126 148 - -
Prci5g0379 373 MobiDBLite consensus disorder prediction 18 53 - -
Prci5g0379 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 177 289 IPR005175 -
Prci5g0379 373 MobiDBLite consensus disorder prediction 314 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0379 Prci-Chr5 5151067 5157064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0379 89 373 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 48.968 2.38e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0379 - - qsa:O6P43_033975 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0658 10 4417160 4422395 Prci5g0379 5 5151067 5157064 CCT