Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0373 ATGGACTCATCACCACCAGTCAGCTGGTTTTCTGACCTGGAAATGGATGCTCATTACGATTTGTTTCCCACGCTGTGCCACCTGAACTGTGTCGATGATGATCAGTTTATTTCACAAGACATAGCCAGTACTGTTCTTCTGGGACAATACTCGCAGCCATCTTTGTCTTGTGAGAGCTACTCTTCACATAATTCATGCACTACTGCTGAGACCAATCATTGTTGGAGCTCCACCATATCTGATCCTTCGTCTTCTTCTCAACTCGTGTCCTTCGATCACTCTATTAACTCTTCATCCCCTACTTTGAAGCCAAACAACGAAGAGTCCTCAGGTATACAGTATTTCTCAGTTCAATCCCTTAATGGGTTTTCCCAAAGTCACAACTTTGAAGCCAAATCCAAATCCTCTCAAGGCATCAACAGGCCCGTTCCTCACGTCAGTGATCACATCATGGCTGAGAGAAAACGAAGAGAAAAGCTCAGCCAGAGCTTCATTGCTCTTTCTGCACTCGTCCCTGGCCTCAAAAAGATGGACAAGGCTTCGGTGCTTGGGGACGCAATCAAGTACGTGAAGGAGCTGAAGGAGAGATTGAGTTTCCTGGAAGAACAGAACAAGAAAAGAAGGGTTGAATCTGTGGTGACGTGTGAAAAGCTAGAGAGTGTTGGTGAAGAAGAAGGACCATGGCTTCCTGAAGTGGAAGCAAGAGTGTTGGAGAAGGAAGTGCTGATTCGAATCCATTGCCAGAAACAGAAGGGACTTTTGGTGAAGATACTTGCAGAGATTCAGAAGCTTAATCTCTTTGCTGTCAACAGCAGCGTCTTGCCCTTCGGGGACTCCAATCTTGACGTCACTATTGTTGCTCAGATGGGGGAAGGTTGCAGCTTGACGATAAGGGATCTCGTGAAGAACCTGCGAGTGGCTATTTTAAGTGCATGTGAAATGTGA 945 0.4603 MDSSPPVSWFSDLEMDAHYDLFPTLCHLNCVDDDQFISQDIASTVLLGQYSQPSLSCESYSSHNSCTTAETNHCWSSTISDPSSSSQLVSFDHSINSSSPTLKPNNEESSGIQYFSVQSLNGFSQSHNFEAKSKSSQGINRPVPHVSDHIMAERKRREKLSQSFIALSALVPGLKKMDKASVLGDAIKYVKELKERLSFLEEQNKKRRVESVVTCEKLESVGEEEGPWLPEVEARVLEKEVLIRIHCQKQKGLLVKILAEIQKLNLFAVNSSVLPFGDSNLDVTIVAQMGEGCSLTIRDLVKNLRVAILSACEM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0373 314 Coils Coil 183 210 - -
Prci5g0373 314 PANTHER BHLH TRANSCRIPTION FACTOR 52 309 - -
Prci5g0373 314 CDD bHLH_AtNAI1_like 145 217 - -
Prci5g0373 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Prci5g0373 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 210 IPR036638 GO:0046983
Prci5g0373 314 Pfam Helix-loop-helix DNA-binding domain 149 193 IPR011598 GO:0046983
Prci5g0373 314 SMART finulus 150 199 IPR011598 GO:0046983
Prci5g0373 314 Gene3D - 145 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0373 Prci-Chr5 5020605 5022559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0373 133 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.265 4.87e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0373 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0373 - - pcin:129310279 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0647 10 4317773 4320058 Prci5g0373 5 5020605 5022559 CCT
Prci5g0373 5 5020605 5022559 Prci5g0373 5 5020605 5022559 ECH