Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0371 ATGTCATTTGCTAACGTGGAGCTTCTGAGAAATGATGCATGGAAGGAAAAGGCAATCAAATTCTGCGGAGGAAGAAGAAGATCGAACCCACTATTTGACCAAACTAGCCGAGTGAAGCAGAATCGTACCTTGCCACGTCACCGGCTTTTTCTTCAACTCTCAGAATTGACATTTCAAGGTGCTGTTTTGGATCTATTCCAAGCCGACCACGACGAGCTTCAGAGTCAGATGACGGAAATATCCTCAGCCATGTACTTGCCTGAATTCGGAATGGAGGATCTGACATTGTTTGAGGAGTTCCCGATGGATTGTTTTGATGGGCTTGATTTCCAATCCTTGGTCTCCGAGAACTATTCACCTTACGAGCGTCCAAACTCCCAGAGAAAACAGAATCCTCAGTCAGTTATAGCCCGACCAGGACCAAGTCCGAGCAAGAAGGTCAAGGTCATCAATAAGTCTGGTGATCCCAGACTCATTTCTTTTGAGCACTCCAATAATACGCACCAGTTATGCGATCTGGCTCCCAATGTGAAGCTCGAAAGCCTCAGTGAAAACGTACTGAATCTGGCGTCTTTAAGAAGCTGTCAAGGCGCATACTATGAAGGCATAAATTTCGCAAAAGGTGAGAAACAGACGAGAAACCCACTCCAAGCTCAAGATCACGTCATGGCCGAACGAAGACGAAGGGAAAAGCTCAACCAGAAGTTCATTACTCTCTCCTCCATCATTCCTGGCCTCAAGAAGATGGACAAGGCGTCGGTGTTGGGAGATGCTATAGAGTACGTGAAACAGCTGAAGGAACGCGAGAAGATTCTGGAAGAACAAGTCGCTATGAATAGAAAGGAATCTGCACTCTTGACGAGGAGAACTATTCTCTTTGCGAACGACGGTGATAAGTCGCCGCCGTCCTATGAAATTCCCGACAAGTCACTGGCTGAAATCGAGGCCAGAGTTTTGGGTAAAGATATACTCATCAGAATCCAATGCGAGAAACATAATGGGTGTGAGGCTAAAATACTGCGAGAATTTGAAAACCTTCGTCTCACTGTTCATAGCAGTAGCACCCTCCCATTTGGAGAGACCACCCTTTGTATAACCATCATCGCTCAGATGGACAAGGAGCACAGCATGACAGCAAAGGATCTCGTGGGAAGCTTGAGGAAGGCATTGACATTAGATCGTGCGTAG 1188 0.4646 MSFANVELLRNDAWKEKAIKFCGGRRRSNPLFDQTSRVKQNRTLPRHRLFLQLSELTFQGAVLDLFQADHDELQSQMTEISSAMYLPEFGMEDLTLFEEFPMDCFDGLDFQSLVSENYSPYERPNSQRKQNPQSVIARPGPSPSKKVKVINKSGDPRLISFEHSNNTHQLCDLAPNVKLESLSENVLNLASLRSCQGAYYEGINFAKGEKQTRNPLQAQDHVMAERRRREKLNQKFITLSSIIPGLKKMDKASVLGDAIEYVKQLKEREKILEEQVAMNRKESALLTRRTILFANDGDKSPPSYEIPDKSLAEIEARVLGKDILIRIQCEKHNGCEAKILREFENLRLTVHSSSTLPFGETTLCITIIAQMDKEHSMTAKDLVGSLRKALTLDRA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0371 395 Coils Coil 262 282 - -
Prci5g0371 395 PANTHER BHLH TRANSCRIPTION FACTOR 110 390 - -
Prci5g0371 395 MobiDBLite consensus disorder prediction 119 147 - -
Prci5g0371 395 Gene3D - 217 287 IPR036638 GO:0046983
Prci5g0371 395 SMART finulus 222 271 IPR011598 GO:0046983
Prci5g0371 395 MobiDBLite consensus disorder prediction 119 138 - -
Prci5g0371 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 291 IPR036638 GO:0046983
Prci5g0371 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Prci5g0371 395 Pfam Helix-loop-helix DNA-binding domain 219 266 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0371 Prci-Chr5 4980745 4982684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0371 143 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.079 1.45e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0371 HLH 9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0371 - - pcin:129311489 781.556