Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0348 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCGCCGGAGGAAGACGCCAAACTCAAAGCTTACATCGAACAGCACGGCACCGGCGGCAACTGGATAGCGCTTCCTCAAAAGATAGGGCTCAAGAGATGCGGGAAAAGCTGTCGTCTGAGATGGTTGAATTATCTTCGTCCCAACATCAAGCATGGAGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTGTATGTTAATATTGGAAGCAGGTGGTCTATAATAGCGGCGCAATTACCAGGGAGAACCGATAATGATATAAAGAACTACTGGAACACAAGGCTCAAGAAGAAGCTAATGGCGAAGCAGCGTAAGCAACAAGAAGCCCAAGCTCGCCGAGCTAACACCCTCAAGCAAGAACTTAAGAGACAGACTAATAATTTGGTGCTGATGAACCAAACTCGTCCTTTGTGCAGCACGCATCATCAGCCTTCTGCAAGTGCTTCTTCTTCCTTCCAAGAGCCCTACGATCTCAACAATCTAAGAAGCTTGTTGACTAAACTAGGTGGAAGATTCTCCCCTGATGATCATCATCTCCCTCCATACCCATATGAATGTGACCCTTGCTTCTTCTTCCCGCAAGACCAGCTATATCCAGTTGAAAACTCAGTGATAAACACTAATGGCAGTAGTACGTCGAACGTATTTGAAGGGTTTCAGAATATTGAAAACTTCCCGAACAACGATTTGAGCGAGATGGGCTGTGTGAACAGTACTACGACGCAGCAAATGGATGGGTTTCAGAGTTACAGTGGAGTAATGGAGTCATCGACGGCCACGACGACTTCAACGGAAAGTACTATTACCAGTTGGGCAGACATGAGCTCTCTGCTTAATTACTCTCATAATATGGTTTCCGAATTCCAAGAAATAATGTTGCCTCAAGATGTTACTTTGGAGGAGCCTACCTACTGTGGATGCAATAACTTCCCTGTACATGGGATGGTCTGA 1005 0.4617 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLMAKQRKQQEAQARRANTLKQELKRQTNNLVLMNQTRPLCSTHHQPSASASSSFQEPYDLNNLRSLLTKLGGRFSPDDHHLPPYPYECDPCFFFPQDQLYPVENSVINTNGSSTSNVFEGFQNIENFPNNDLSEMGCVNSTTTQQMDGFQSYSGVMESSTATTTSTESTITSWADMSSLLNYSHNMVSEFQEIMLPQDVTLEEPTYCGCNNFPVHGMV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0348 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Prci5g0348 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Prci5g0348 334 Gene3D - 7 68 - -
Prci5g0348 334 CDD SANT 71 113 IPR001005 -
Prci5g0348 334 FunFam Transcription factor RAX3 7 68 - -
Prci5g0348 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Prci5g0348 334 SMART sant 67 115 IPR001005 -
Prci5g0348 334 SMART sant 13 64 IPR001005 -
Prci5g0348 334 Gene3D - 70 146 - -
Prci5g0348 334 PANTHER OS09G0431300 PROTEIN 1 300 - -
Prci5g0348 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Prci5g0348 334 CDD SANT 16 62 IPR001005 -
Prci5g0348 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Prci5g0348 334 Coils Coil 110 152 - -
Prci5g0348 334 FunFam Transcription factor RAX3 70 145 - -
Prci5g0348 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Prci5g0348 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0348 Prci-Chr5 4729009 4730547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0348 1 296 MYB Transcription Factor Family AT3G49690 48.254 9.51e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci5g0348 Myb_DNA-binding 3.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0348 K09422 - gmx:106795158 333.183