Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0338 ATGATAAGAAACATGTGTTTCTCATCAGCACATTTACTGGTGGCGCTGCTTCTGATGGTGGCGTTCTACAAAAATTGCAAGGCGTCAGATGGATACAAGAATTGTTCTGGGTTATGCGGACATCACACCGTGAGCAGCCCTTTCCGTCTGAGAGACTTTGCAGAGCAGTGTGGTGATCATAGGTATGAGCTATCTTGTGAGCACAACCAATTGGTGCTGTACTCGCAATCTGGTAGATACAGTGTCTTGTCCATTAACTATGAGAACTATACAATCCGAGTGAGGGATGCTGAAGTTGTGGAGTTGAATTACTCTTCCCTGCCCCGAGATTCTTTAACAGACTACAACTTTAGCTATCGGGATCCATATGCCCTTACCATTGAAACAAATTATGAAGATGGATCTGGGGCTTATAATCGATTGACAAAGATTATGATATACGTGCGGTGTAAAAGCCCTGTGGATGCCTCAGTGTTTGTGGACACAGCCCCTTGCTTCAAAAATTCCAGCAGGTCAGTAGCTGCTGCGTCGTCGTATGTGTATGCGAGCGTAATTGGCAGAGAAACTGCAGGGGAATGGGGGTTAGGGGACGATTGTGGTATAGAGATAATGTATATGACATCGTGGCCTGCTCCAAAGAACCAGTCCTGGTCCTGCGAAGACATCCACAATATGCTTGTTTACGGCTTTGAGCTTTCTTGGCTGAACAGTGACTGCCTCAAAGTTGGAGGTTATGCATATCTCGATGAAAGTAAGCAACGCCATTGCGCTGGCTCAAGTATAAATTATATCATTTTTGAAGATATCCTGTTCTTCCTCCAATTCTTTATTGAGAACCTCCTCCCCATTATATTAGCCGGTAAATGCGTTTTCGGGGCTCCATTTGTCATTGTTCTTCTGATCTACAAATGGCGGGGAAGACATCTATCCATGTATGACAACATTGAAGATTTTTTGCAAAGCGACAACAACATCATGCCTATAAGATATTCCTACAGAGATATCAAGAAGATGACCAAAGGGTTTAAAATAAGATTAGGGAAGGGAGGCTTTGGCTCTGTCTTCAAAGGACAACTTCGAAGTGGTCGTGATGTAGCTGTCAAGATATTGGATAAAGCTAACACTGATGGTCAGGAATTCATCAATGAAGTTTCTACACTTGGTAGAATCCACCATGTTAACGTGGTGCAACTCATCGGTTATTGTGTGGAACGCTCAAAGCGTGCTCTTATATATGAGTTCATGCAAAATGGATCTCTTGAAAAATACATTTTCTCTAAACTTGATGAGAATGATCAATCCTTGAATGTTCATCAATTGTATGCCATTTCTCTAGGAGTAGCTCGTGGTATTGAATATCTTCACAAAGGATGTGCTATGCAAATCCTGCATTTTGATATAAAGCCACATAACATTCTTCTTGATGATAACTTCATCCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTCTATCCTACAAATAATAGCATTGTGTCTCTTACAGCAGCAAGGGGAACTATAGGATACATGGCTCCTGAGCTTTTCTACAGAAATGTTGGTGGGGTCTCTTATAAAGCTGATATCTATAGTTTTGGGATGCTATTAATGGAAATGACTGGTAGAAGGAAAAATTTAAATGTCTTAGTTGAGCATTCAAGTCAGTTTTACTTTCCCTTTTGGGTTTATGATCAATTAAATGAAGGAAATGAAATTAGCATAGCAGATGCAACAGGGGAAGAAATGAAATTGGCAAGGAAAATGCTAATTGTGGGGTTGTGGTGCATTCAAACAAAGCCTAACGATCGTCCTTCAATGAATAAAGTTGTTGAGATGCTTGAGGCAGAGGAGCAAGACTTAGAATTGCCTCAAAAGCCTTATCTGTATCCAAGTGACTTACCAGCAGCAAATCATGATAGTGATCATTCAACTTCAACAAGGCCATCCAAGTCAAGCAATCGGCCTTCAATGAACGAAATTGTGGAAATGCTTGAAGGAGAAGAGCAAGAGTTAGAATTGTCTCAATATTCTCAAGATTTTCAAACAATTGATGCTAGTGATCATATATGTTCAACGTCTCCATCCTCTAATCCATCAGTGAGTAAGCCAAAAGAAACAACCTCATTTTTAACTAAAGAAGATGAGAGATCAATATAG 2154 0.4058 MIRNMCFSSAHLLVALLLMVAFYKNCKASDGYKNCSGLCGHHTVSSPFRLRDFAEQCGDHRYELSCEHNQLVLYSQSGRYSVLSINYENYTIRVRDAEVVELNYSSLPRDSLTDYNFSYRDPYALTIETNYEDGSGAYNRLTKIMIYVRCKSPVDASVFVDTAPCFKNSSRSVAAASSYVYASVIGRETAGEWGLGDDCGIEIMYMTSWPAPKNQSWSCEDIHNMLVYGFELSWLNSDCLKVGGYAYLDESKQRHCAGSSINYIIFEDILFFLQFFIENLLPIILAGKCVFGAPFVIVLLIYKWRGRHLSMYDNIEDFLQSDNNIMPIRYSYRDIKKMTKGFKIRLGKGGFGSVFKGQLRSGRDVAVKILDKANTDGQEFINEVSTLGRIHHVNVVQLIGYCVERSKRALIYEFMQNGSLEKYIFSKLDENDQSLNVHQLYAISLGVARGIEYLHKGCAMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPTNNSIVSLTAARGTIGYMAPELFYRNVGGVSYKADIYSFGMLLMEMTGRRKNLNVLVEHSSQFYFPFWVYDQLNEGNEISIADATGEEMKLARKMLIVGLWCIQTKPNDRPSMNKVVEMLEAEEQDLELPQKPYLYPSDLPAANHDSDHSTSTRPSKSSNRPSMNEIVEMLEGEEQELELSQYSQDFQTIDASDHICSTSPSSNPSVSKPKETTSFLTKEDERSI 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0338 717 MobiDBLite consensus disorder prediction 683 705 - -
Prci5g0338 717 Gene3D Phosphorylase Kinase; domain 1 316 414 - -
Prci5g0338 717 FunFam serine/threonine-protein kinase PBS1-like 311 414 - -
Prci5g0338 717 SMART serkin_6 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0338 717 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
Prci5g0338 717 MobiDBLite consensus disorder prediction 636 654 - -
Prci5g0338 717 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Prci5g0338 717 MobiDBLite consensus disorder prediction 620 654 - -
Prci5g0338 717 MobiDBLite consensus disorder prediction 683 717 - -
Prci5g0338 717 FunFam PR5-like receptor kinase 415 623 - -
Prci5g0338 717 Pfam Protein tyrosine and serine/threonine kinase 344 612 IPR001245 GO:0004672|GO:0006468
Prci5g0338 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Prci5g0338 717 ProSiteProfiles Protein kinase domain profile. 340 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0338 717 SUPERFAMILY Protein kinase-like (PK-like) 320 614 IPR011009 -
Prci5g0338 717 Pfam Wall-associated receptor kinase galacturonan-binding 35 96 IPR025287 GO:0030247
Prci5g0338 717 PANTHER RUST RESISTANCE KINASE LR10-RELATED 312 635 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0338 Prci-Chr5 4474304 4481742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0338 1 633 Receptor kinase-like Gene Family AT5G38260 35.703 5.57e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Prci5g0338 PK_Tyr_Ser-Thr 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0338 - - pcin:129310315 1204.5