Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0293 ATGCTTCCCTGCATCCCTTTTTCTATTTGCGATTTAATGGCCATAAGGCCCTTCCATTTCACCTTCTCGCGTGATAAATTCTTTTCTCTTCTGCGCGCTCCTTTGCTTTCTTCTTCTTCTCCTCCTCGTTCTTGTTCTTGTCCTGCTTCTTCGTTTCCCTGGCGTTATAAACCATCGTTGTCCACTCGATTGTTTTCCCCTATTTTTTTGTTCCGTCACTTCGCGGCGTTAGCGGCAACTCCGTTCTCACGCGCTCGCCAGTGTTATCCGCCACCGCAGCCACACGACGACCCCCTGCGGTCGTTGTCACCATCCAACACTCTGGCGCAGAAGATTGGAAAATCCATTCGCCGACCGGGCGCTGCCTCGAAGGCGAGGGTTTATGCCGATGTCAACGTTGTCCGTCCTAAGGAATACTGGGACTATGAGTCACTTACCGTCCAGTGGGGGGAGCAAGATGATTACGAGGTTTCGAGGAAGGTGGGAAGGGGGAAATACAGTGAGGTGTTTGAGGGCGTTCACTGCACGGATAATGAAAAGTGCATCATTAAGATTCTGAAGCCAGTGAAGAAGAAGAAGATCAAGAGGGAGATCAAAATATTGCAGAATCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGATCAGCAGTCAAAGACTCCAAGCCTTATTTTTGAATATGTTAACAATACTGACTTTAAAGTGCTCTATCCTACACTGTCAGACTATGACATACGGTATTACATCTATGAGCTTCTAAAGGCCCTGGATTATTGCCATTCACAAGGAATCATGCATCGAGATGTAAAGCCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGCCTTGCAGAATTCTATCATCCTGGTAAAGAATATAATGTTCGAGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGCATGATTTTTCGTAAAGAGCCATTCTTTTATGGACATGATAATTACGATCAACTGGTCAAAATTGCAAGAGTACTTGGGACAGATGAATTGTATGCATATTTGAACAAGTATCGGATAGAGTTGGACCCCAATCTTGCAGTACTTGTTGGAAGGCATAGTCGGAAGCCATGGACAAAGTTCATTAACGTTGAAAATCAACATTTGGCTGTTCCTGAGGCTATTGACTTTGTTGACAAGTTACTGCGATATGATCACCAAGAACGACCCACCGCAAAAGAAGCCATGAGCCATCCTTACTTCAATCCTGTTAGAAATGCAGAAAGCAGTCGAACTCGTGCTCATTGA 1365 0.4425 MLPCIPFSICDLMAIRPFHFTFSRDKFFSLLRAPLLSSSSPPRSCSCPASSFPWRYKPSLSTRLFSPIFLFRHFAALAATPFSRARQCYPPPQPHDDPLRSLSPSNTLAQKIGKSIRRPGAASKARVYADVNVVRPKEYWDYESLTVQWGEQDDYEVSRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIARVLGTDELYAYLNKYRIELDPNLAVLVGRHSRKPWTKFINVENQHLAVPEAIDFVDKLLRYDHQERPTAKEAMSHPYFNPVRNAESSRTRAH 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0293 454 SMART serkin_6 155 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0293 454 PANTHER CASEIN KINASE II SUBUNIT ALPHA 119 449 IPR045216 GO:0004674|GO:0006468
Prci5g0293 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Prci5g0293 454 Gene3D Transferase(Phosphotransferase) domain 1 232 440 - -
Prci5g0293 454 Pfam Protein kinase domain 155 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0293 454 FunFam Casein kinase II subunit alpha 232 443 - -
Prci5g0293 454 MobiDBLite consensus disorder prediction 434 454 - -
Prci5g0293 454 CDD STKc_CK2_alpha 136 440 IPR045216 GO:0004674|GO:0006468
Prci5g0293 454 SUPERFAMILY Protein kinase-like (PK-like) 128 444 IPR011009 -
Prci5g0293 454 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Prci5g0293 454 FunFam Casein kinase II subunit alpha 141 231 - -
Prci5g0293 454 Gene3D Phosphorylase Kinase; domain 1 155 231 - -
Prci5g0293 454 ProSiteProfiles Protein kinase domain profile. 155 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0293 Prci-Chr5 4123155 4130101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0293 153 448 Core Cell Cycle Gene Families AT1G20930 30.650 1.60e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Prci5g0293 Pkinase 3.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0293 K03097 - qsa:O6P43_024562 721.079