Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0266 ATGATTATGGAAGACAATGTTGTGTCACCCAGTACCTTAATAGATTCGTCCATAGATTTCGATTACATGGACGAACTTTTTTCAGACGGATGCTGGTTGGAAACCCCTGCGGATGGATCTGACTTTTTGCTGAGAAGCCCTTCTGCGTCCAATCCCCTCCTTGACTCATCATATTCATGGCCTGCCTTGGATACTGTTGGGCATGTGAGTCTAGAACAAAGGCAGAGTCCCTTGATTGACGAATTACAGGAAACACAAACCAATACTCGATTGGTTGGCAAGGGCAACGACATAATAGATGTTGCTGGTACTTGTAATCAGTCTGAAATTCATTCAGTTGAAAGCTCAGAATTCGTAAGAAGGTGGTGGATTGGACCTATGGGTAATCCGAGCCCCGAGTGTTCTGTGTTGGAGAGGTTAATTAAGGCACTCGTGTATATAAGAGATTTCAATAGAGACAAAGATGTGCTTTTACAAATATGGGTGCCGGTTAATAGAGAGGGTGGGAGGATTCTAAGCACCAGTGATCTTCCCTTCTCGCTTGAAAGTAGCAGTCCAAATCTTGTGAAGTACCGAGAAATCTCTGCCAAATACAAGTTTTTAGCTGAGGGATATTCTAGGGGCTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAAGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAATGATGAATACCCTCGAGTTAGCCATGCTCACGAGTATGATGTGCGTGGATCTTTAGCAATTCCAGTCTTTGAGAAGTGTGGCAACATTTGCTTGGGCGTTATTGAGGTTGTAATGACATCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGTGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGGAGCACCAATATTTCAAGTATACAGAATGTGAAGGTATCCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAAGTTTTGAGATCGGCGTGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACTCAGATGATAATTTTCTATACTGTATATCTCCTGTTGAGCATGCCTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGTTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAGGCTTTTATGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTAAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTAGGCTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCGTAGCATTACAGATGACTTTGTGCTAGAGTTCTTCTTGCCTATAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATAAAAAGGGTTTGCCATAGTTTGCGGGTGATAACAAATAAAGAACTGGAGGAGGAAAAACGCTTACCAATTGATGAAGTGACAGTCCCTGCAGATAGTAGATGTGCTAGGGTGGAGCTCCAACAATGCAGTAAGGTTACCTCACATGGCACCAAAGAAAAGTCAAATGAAACTGTGACTAGACAGTTTTCTAACCTGATTCAGCAAGAAGACTCTATTTTAAAAGAAAACCCTGAATATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCGATTGAAGGTTTAAGTAAAACAGCAGATAAAAGACGGACCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCAGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATTTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGCGCTTTCCAGATAGATTCTTTCTACTCAAAGTTTCCAGAGCTAGCATCTCCAAATTTGCCCGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCCGCCAAATCCATCAAGCACAAGGCCTGATACTGGCTTGATGAGCCCAGAAGCACCCTTATCTTCATGCAATCAGAGTTCCAGTTCAAGTCATTCCTCTTCCATCCTGTCAGAGTTACGGCTTCATGCACAAAATGTTGCGGGTGGAAAAGATCCTAGGGTTAGAGAAGATTCTGCTGATGGGGTTATGAAGAGGATTACAAGTGAAGCAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACTTCCCAGAGCCAGGAAACACTTCATGAACATCCAAAATCTGTGTTGAAAAGCAGTCACAAGGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGATGAGAAAATCCGGTTTCGGATGCCGAAGAGTTGGGGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAATATAGATGACATGCACAAATTCGATATCAAGTATCTGGACGATGACTCTGACTGGGTCTTGCTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTCTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTAGAGAGCAAATCATAG 2640 0.4273 MIMEDNVVSPSTLIDSSIDFDYMDELFSDGCWLETPADGSDFLLRSPSASNPLLDSSYSWPALDTVGHVSLEQRQSPLIDELQETQTNTRLVGKGNDIIDVAGTCNQSEIHSVESSEFVRRWWIGPMGNPSPECSVLERLIKALVYIRDFNRDKDVLLQIWVPVNREGGRILSTSDLPFSLESSSPNLVKYREISAKYKFLAEGYSRGLVPGLPGRVFKEKVPEWTPDVRFFRNDEYPRVSHAHEYDVRGSLAIPVFEKCGNICLGVIEVVMTSQKIKYFPELECVCKALQAVDLRSTNISSIQNVKVSNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHSDDNFLYCISPVEHACYVGDPCVQAFHEVCSEHHLLKGQGVTGEAFMTNQPCFSTDVTSLSKIDYPLSHHARIFRLRAAVAIRLRSIRSITDDFVLEFFLPINCTDSEEQKKMLTSLSMIIKRVCHSLRVITNKELEEEKRLPIDEVTVPADSRCARVELQQCSKVTSHGTKEKSNETVTRQFSNLIQQEDSILKENPEYGWECSSFGEGGLPIEGLSKTADKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDPPNPSSTRPDTGLMSPEAPLSSCNQSSSSSHSSSILSELRLHAQNVAGGKDPRVREDSADGVMKRITSEAGLKSLSQDTAELLPTSQSQETLHEHPKSVLKSSHKAHKKEDTHRVKVTFRDEKIRFRMPKSWGYEDLLWEIAWRFNIDDMHKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLESKS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0266 879 Pfam PB1 domain 794 874 IPR000270 GO:0005515
Prci5g0266 879 MobiDBLite consensus disorder prediction 671 717 - -
Prci5g0266 879 CDD PB1_NLP 795 874 IPR034891 -
Prci5g0266 879 Pfam RWP-RK domain 583 631 IPR003035 -
Prci5g0266 879 SMART PB1_new 794 877 IPR000270 GO:0005515
Prci5g0266 879 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Prci5g0266 879 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Prci5g0266 879 Gene3D - 790 875 - -
Prci5g0266 879 PANTHER PROTEIN NLP8 113 874 IPR045012 GO:0003700
Prci5g0266 879 SUPERFAMILY CAD & PB1 domains 785 876 - -
Prci5g0266 879 MobiDBLite consensus disorder prediction 767 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0266 Prci-Chr5 3689260 3695198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0266 3 871 NLP Transcription Factor Family AT1G76350 47.816 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Prci5g0266 PB1 1.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0266 - - gmx:100790922 1075.85