Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0264 ATGATTATGGAAGACAATGTTGTGTCACCCAGTACCTTAATAGATTCGTCCATAGATTTCGATTACATGGACGAACTTTTTTCAGACGGATGCTGGTTGGAAACCCCTGCGGATGGATCTGACTTTTTGCTGAGAAGCCCTTCTGCGTCCAATCCCCTCCTTGACTCATCATATTCATGGCCTGCCTTGGATACTGTTGGGCATGTGAGTCTAGAACAAAGGCAGAGTCCCTTGATTGACGAATTACAGGAAACACAAACCAATACTCGATTGGTTGGCAAGGGCAACGACATAATAGATGTTGCTGGTACTTGTAATCAGTCTGAAATTCATTCAGTTGAAAGCTCAGAATTCGTAAGAAGGTGGTGGATTGGACCTATGGGTAATCCGAGCCCCGAGTGTTCTGTGTTGGAGAGGTTAATTAAGGCACTCGTGTATATAAGAGATTTCAATAGAGACAAAGATGTGCTTTTACAAATATGGGTGCCGGTTAATAGAGAGGGTGGGAGGATTCTAAGCACCAGTGATCTTCCCTTCTCGCTTGAAAGTAGCAGTCCAAATCTTGTGAAGTACCGAGAAATCTCTGCCAAATACAAGTTTTTAGCTGAGGGATATTCTAGGGGCTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAAGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAATGATGAATACCCTCGAGTTAGCCATGCTCACGAGTATGATGTGCGTGGATCTTTAGCAATTCCAGTCTTTGAGAAGTGTGGCAACATTTGCTTGGGCGTTATTGAGGTTGTAATGACATCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGTGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGGAGCACCAATATTTCAAGTATACAGAATGTGAAGCAGGTATCCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAAGTTTTGAGATCGGCGTGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACTCAGATGATAATTTTCTATACTGTATATCTCCTGTTGAGCATGCCTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGTTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAGGCTTTTATGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTAAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTAGGCTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCGTAGCATTACAGATGACTTTGTGCTAGAGTTCTTCTTGCCTATAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATAAAAAGGGTTTGCCATAGTTTGCGGGTGATAACAAATAAAGAACTGGAGGAGGAAAAACGCTTACCAATTGATGAAGTGACAGTCCCTGCAGATAGTAGATGTGCTAGGGTGGAGCTCCAACAATGCAGTAAGGTTACCTCACATGGCACCAAAGAAAAGTCAAATGAAACTGTGACTAGACAGTTTTCTAACCTGATTCAGCAAGAAGACTCTATTTTAAAAGAAAACCCTGAATATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCGATTGAAGGTTTAAGTAAAACAGCAGATAAAAGACGGACCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCAGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATTTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGCGCTTTCCAGATAGATTCTTTCTACTCAAAGTTTCCAGAGCTAGCATCTCCAAATTTGCCCGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCCGCCAAATCCATCAAGCACAAGGCCTGATACTGGCTTGATGAGCCCAGAAGCACCCTTATCTTCATGCAATCAGAGTTCCAGTTCAAGTCATTCCTCTTCCATCCTGTCAGAGTTACGGCTTCATGCACAAAATGTTGCGGGTGGAAAAGATCCTAGGGTTAGAGAAGATTCTGCTGATGGGGTTATGAAGAGGATTACAAGTGAAGCAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACTTCCCAGAGCCAGGAAACACTTCATGAACATCCAAAATCTGTGTTGAAAAGCAGTCACAAGGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGATGAGAAAATCCGGTTTCGGATGCCGAAGAGTTGGGGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAATATAGATGACATGCACAAATTCGATATCAAGTATCTGGACGATGACTCTGACTGGGTCTTGCTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTCTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTAGAGAGCAAATCATAG 2643 0.4275 MIMEDNVVSPSTLIDSSIDFDYMDELFSDGCWLETPADGSDFLLRSPSASNPLLDSSYSWPALDTVGHVSLEQRQSPLIDELQETQTNTRLVGKGNDIIDVAGTCNQSEIHSVESSEFVRRWWIGPMGNPSPECSVLERLIKALVYIRDFNRDKDVLLQIWVPVNREGGRILSTSDLPFSLESSSPNLVKYREISAKYKFLAEGYSRGLVPGLPGRVFKEKVPEWTPDVRFFRNDEYPRVSHAHEYDVRGSLAIPVFEKCGNICLGVIEVVMTSQKIKYFPELECVCKALQAVDLRSTNISSIQNVKQVSNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHSDDNFLYCISPVEHACYVGDPCVQAFHEVCSEHHLLKGQGVTGEAFMTNQPCFSTDVTSLSKIDYPLSHHARIFRLRAAVAIRLRSIRSITDDFVLEFFLPINCTDSEEQKKMLTSLSMIIKRVCHSLRVITNKELEEEKRLPIDEVTVPADSRCARVELQQCSKVTSHGTKEKSNETVTRQFSNLIQQEDSILKENPEYGWECSSFGEGGLPIEGLSKTADKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDPPNPSSTRPDTGLMSPEAPLSSCNQSSSSSHSSSILSELRLHAQNVAGGKDPRVREDSADGVMKRITSEAGLKSLSQDTAELLPTSQSQETLHEHPKSVLKSSHKAHKKEDTHRVKVTFRDEKIRFRMPKSWGYEDLLWEIAWRFNIDDMHKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLESKS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0264 880 SMART PB1_new 795 878 IPR000270 GO:0005515
Prci5g0264 880 MobiDBLite consensus disorder prediction 768 795 - -
Prci5g0264 880 SUPERFAMILY CAD & PB1 domains 786 877 - -
Prci5g0264 880 Gene3D - 791 876 - -
Prci5g0264 880 Pfam RWP-RK domain 584 632 IPR003035 -
Prci5g0264 880 MobiDBLite consensus disorder prediction 672 718 - -
Prci5g0264 880 Pfam PB1 domain 795 875 IPR000270 GO:0005515
Prci5g0264 880 CDD PB1_NLP 796 875 IPR034891 -
Prci5g0264 880 PANTHER PROTEIN NLP8 113 875 IPR045012 GO:0003700
Prci5g0264 880 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Prci5g0264 880 ProSiteProfiles PB1 domain profile. 795 878 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0264 Prci-Chr5 3689260 3695198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0264 3 872 NLP Transcription Factor Family AT1G76350 47.763 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Prci5g0264 PB1 1.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0264 - - gmx:100790922 1082.4