LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci5g0264	ATGATTATGGAAGACAATGTTGTGTCACCCAGTACCTTAATAGATTCGTCCATAGATTTCGATTACATGGACGAACTTTTTTCAGACGGATGCTGGTTGGAAACCCCTGCGGATGGATCTGACTTTTTGCTGAGAAGCCCTTCTGCGTCCAATCCCCTCCTTGACTCATCATATTCATGGCCTGCCTTGGATACTGTTGGGCATGTGAGTCTAGAACAAAGGCAGAGTCCCTTGATTGACGAATTACAGGAAACACAAACCAATACTCGATTGGTTGGCAAGGGCAACGACATAATAGATGTTGCTGGTACTTGTAATCAGTCTGAAATTCATTCAGTTGAAAGCTCAGAATTCGTAAGAAGGTGGTGGATTGGACCTATGGGTAATCCGAGCCCCGAGTGTTCTGTGTTGGAGAGGTTAATTAAGGCACTCGTGTATATAAGAGATTTCAATAGAGACAAAGATGTGCTTTTACAAATATGGGTGCCGGTTAATAGAGAGGGTGGGAGGATTCTAAGCACCAGTGATCTTCCCTTCTCGCTTGAAAGTAGCAGTCCAAATCTTGTGAAGTACCGAGAAATCTCTGCCAAATACAAGTTTTTAGCTGAGGGATATTCTAGGGGCTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAAGTTCCTGAGTGGACTCCTGATGTTCGATTTTTCAGGAATGATGAATACCCTCGAGTTAGCCATGCTCACGAGTATGATGTGCGTGGATCTTTAGCAATTCCAGTCTTTGAGAAGTGTGGCAACATTTGCTTGGGCGTTATTGAGGTTGTAATGACATCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGTGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGGAGCACCAATATTTCAAGTATACAGAATGTGAAGCAGGTATCCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAAGTTTTGAGATCGGCGTGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACTCAGATGATAATTTTCTATACTGTATATCTCCTGTTGAGCATGCCTGTTATGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGTTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAGGCTTTTATGACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTAAGCAAGATAGATTATCCACTGTCTCATCATGCAAGGATTTTTAGGCTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCGTAGCATTACAGATGACTTTGTGCTAGAGTTCTTCTTGCCTATAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATAAAAAGGGTTTGCCATAGTTTGCGGGTGATAACAAATAAAGAACTGGAGGAGGAAAAACGCTTACCAATTGATGAAGTGACAGTCCCTGCAGATAGTAGATGTGCTAGGGTGGAGCTCCAACAATGCAGTAAGGTTACCTCACATGGCACCAAAGAAAAGTCAAATGAAACTGTGACTAGACAGTTTTCTAACCTGATTCAGCAAGAAGACTCTATTTTAAAAGAAAACCCTGAATATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCGATTGAAGGTTTAAGTAAAACAGCAGATAAAAGACGGACCAAAGCAGAGAAAACTATCACTCTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCAGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATTTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGCGCTTTCCAGATAGATTCTTTCTACTCAAAGTTTCCAGAGCTAGCATCTCCAAATTTGCCCGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCCGCCAAATCCATCAAGCACAAGGCCTGATACTGGCTTGATGAGCCCAGAAGCACCCTTATCTTCATGCAATCAGAGTTCCAGTTCAAGTCATTCCTCTTCCATCCTGTCAGAGTTACGGCTTCATGCACAAAATGTTGCGGGTGGAAAAGATCCTAGGGTTAGAGAAGATTCTGCTGATGGGGTTATGAAGAGGATTACAAGTGAAGCAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACTTCCCAGAGCCAGGAAACACTTCATGAACATCCAAAATCTGTGTTGAAAAGCAGTCACAAGGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGATGAGAAAATCCGGTTTCGGATGCCGAAGAGTTGGGGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGATTCAATATAGATGACATGCACAAATTCGATATCAAGTATCTGGACGATGACTCTGACTGGGTCTTGCTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTCTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTAGAGAGCAAATCATAG	2643	0.4275	MIMEDNVVSPSTLIDSSIDFDYMDELFSDGCWLETPADGSDFLLRSPSASNPLLDSSYSWPALDTVGHVSLEQRQSPLIDELQETQTNTRLVGKGNDIIDVAGTCNQSEIHSVESSEFVRRWWIGPMGNPSPECSVLERLIKALVYIRDFNRDKDVLLQIWVPVNREGGRILSTSDLPFSLESSSPNLVKYREISAKYKFLAEGYSRGLVPGLPGRVFKEKVPEWTPDVRFFRNDEYPRVSHAHEYDVRGSLAIPVFEKCGNICLGVIEVVMTSQKIKYFPELECVCKALQAVDLRSTNISSIQNVKQVSNNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHSDDNFLYCISPVEHACYVGDPCVQAFHEVCSEHHLLKGQGVTGEAFMTNQPCFSTDVTSLSKIDYPLSHHARIFRLRAAVAIRLRSIRSITDDFVLEFFLPINCTDSEEQKKMLTSLSMIIKRVCHSLRVITNKELEEEKRLPIDEVTVPADSRCARVELQQCSKVTSHGTKEKSNETVTRQFSNLIQQEDSILKENPEYGWECSSFGEGGLPIEGLSKTADKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDPPNPSSTRPDTGLMSPEAPLSSCNQSSSSSHSSSILSELRLHAQNVAGGKDPRVREDSADGVMKRITSEAGLKSLSQDTAELLPTSQSQETLHEHPKSVLKSSHKAHKKEDTHRVKVTFRDEKIRFRMPKSWGYEDLLWEIAWRFNIDDMHKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLESKS	880

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci5g0264	880	SMART	PB1_new	795	878	IPR000270	GO:0005515
	Prci5g0264	880	MobiDBLite	consensus disorder prediction	768	795	-	-
	Prci5g0264	880	SUPERFAMILY	CAD & PB1 domains	786	877	-	-
	Prci5g0264	880	Gene3D	-	791	876	-	-
	Prci5g0264	880	Pfam	RWP-RK domain	584	632	IPR003035	-
	Prci5g0264	880	MobiDBLite	consensus disorder prediction	672	718	-	-
	Prci5g0264	880	Pfam	PB1 domain	795	875	IPR000270	GO:0005515
	Prci5g0264	880	CDD	PB1_NLP	796	875	IPR034891	-
	Prci5g0264	880	PANTHER	PROTEIN NLP8	113	875	IPR045012	GO:0003700
	Prci5g0264	880	ProSiteProfiles	RWP-RK domain profile.	571	652	IPR003035	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci5g0264	Prci-Chr5	3689260	3695198	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci5g0264	3	872	NLP Transcription Factor Family	AT1G76350	47.763	0.0	718

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Prci5g0264		PB1	1.1e-19	CL0072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci5g0264	-		-	gmx:100790922	1082.4

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