Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0239 ATGAAGGAGCAGATAGACATTGCAGACACTAAGGTGCTGGTTGATATTGTAAAATTGGTACAAAAAAAAGGAATGGAGGGTAAGCTGGGAAACTGGCATAACTTCTTACTCAGTCATGATAAAAAGTTTGGGTCCTGTCTGCGTGACCCAGCAAGGAGGTCCCGTGAGACATTGGTTGCATTTCTAAAGACGTTTACAAAGCAGAGCGATTTAAAGATTTTTGATGCCATCATCCGACGCCATTCTAATCAAGACTTATTTAAGCTATACAAAGGAAAATCTGATGGCATCCCTGAGCAGAGGCTTGTCCAAAACACTTTGCAGCACCCATTGTATCCATTGGATTATGCATTTGGAGAAGTTGATGAGGACTGGGTTGTTATAAACCTTAGTAAAAAAAACAGGGTGCTGAAATTTACCAAGATGATTGCTATTGATTGTGAAATGGTTCTCTGTGACGATGGAACTGAAGCAGTAGTAAGTGTCTGTGTGGTTGACCGCAATTTGAAGGTTAAACTAAACAAGCGTGTTCACCCAAACAAAGCAATTGCTGACTACAGAACGGAGATTACTGGTGTCTCTCCTAAAGATCTCGAAGGTGTCACGTGCTCATTGTCTAAGATACAGAAATTCTTGAGAAAGATGTTAGTGGATGGAACAATTTTAGTGGGACATAGTTTGCATAATGATCTGCGTGCTCTGAAGCTAGATTATGTTAGGGTGATTGACACCTCATATATCTTCCAATACCCCGATGATAATACTCACAAGAGACCTTCTTTGAATACTTTATGTAAGGCTGTGCTAGGTTATGAAGTTCGGGAAGCAGGTGCTCCACATAATTGTCGTGATGACGCAACGGCAGCAATGAAACTTGTTCTTGCTAAGATAGAGCATGGTGTTGATTATGCAATTCCCTTGCCTCAACCGCTTGTTGTTGAAAGTGATATGGCTAAGCTTCTTCTTCACAAGATATCATGTCGGGTTACTACTGAAGAGCTGCGTAAAGTTGTTCCTGGAGATTTCAATTTACAGCTGGGGCCACGTAAAGGGGCAATATATTCTGCCTATGCCATCTTCAAAAATCCACAAGAGGCCAATAAGGCCTTTGAAAGTCTCCAGGGCCACCAAGAACAGGATTCAGATCGACGTCCACAGAAACTTGTCGAATTCCAGCTCAATACAGGCAAGAAAGCCAGTATTTATGTTCGGAAAATGGCACCGGATGGCCCCAGTGACTCTAAGAGAGATCTAGAAGCGGCAGAAATTGAAGGGAAAGCGTCAAAGAAAGCAAAGATGGACCCTGAAATTGAAGGGAATACCCCGACCATCTCTAACAAGTGCGAGACCCACTTGAATGAGATTGAAGCATTAAATCAGCGACTGAAAGAAAGTGATTTGGAGATTGAATCGCTGAAGCAACAGTTGAAACAAAAGGAATATGAAATCTCCATACTGAATAAAATGGTGTACTCCTTGAACAAGAAATTAGGGAAATGA 1500 0.4167 MKEQIDIADTKVLVDIVKLVQKKGMEGKLGNWHNFLLSHDKKFGSCLRDPARRSRETLVAFLKTFTKQSDLKIFDAIIRRHSNQDLFKLYKGKSDGIPEQRLVQNTLQHPLYPLDYAFGEVDEDWVVINLSKKNRVLKFTKMIAIDCEMVLCDDGTEAVVSVCVVDRNLKVKLNKRVHPNKAIADYRTEITGVSPKDLEGVTCSLSKIQKFLRKMLVDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYPDDNTHKRPSLNTLCKAVLGYEVREAGAPHNCRDDATAAMKLVLAKIEHGVDYAIPLPQPLVVESDMAKLLLHKISCRVTTEELRKVVPGDFNLQLGPRKGAIYSAYAIFKNPQEANKAFESLQGHQEQDSDRRPQKLVEFQLNTGKKASIYVRKMAPDGPSDSKRDLEAAEIEGKASKKAKMDPEIEGNTPTISNKCETHLNEIEALNQRLKESDLEIESLKQQLKQKEYEISILNKMVYSLNKKLGK 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0239 499 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 301 IPR047021 GO:0004527
Prci5g0239 499 CDD REX1_like 143 294 IPR034922 -
Prci5g0239 499 Gene3D - 138 303 IPR036397 GO:0003676
Prci5g0239 499 FunFam Small RNA degrading nuclease 3 137 310 - -
Prci5g0239 499 MobiDBLite consensus disorder prediction 424 445 - -
Prci5g0239 499 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Prci5g0239 499 Coils Coil 448 489 - -
Prci5g0239 499 SMART exoiiiendus 141 302 IPR013520 -
Prci5g0239 499 Pfam Exonuclease 143 292 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0239 Prci-Chr5 3288098 3293823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0239 141 292 C2H2 Transcription Factor Family AT2G48100 34.146 1.59e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0239 K14570 - gmx:100785565 587.415