Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0228 ATGACCCTCTCTCCTCCGCCTCTTCCTCTCTCTCTGATTCAAACATTTCTCGCTTTTGACACTTCCCAGAACCTCTGTTTTCCTCTGTTTTTGCAGATAATGGAAGCTCCACAAGCCAAGAAGAGAGGGCTCGAAGGAGAGAGACGCTACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATCAGAGAACCCAACAAACGTTCCAGGATTTGGCTCGGATCCTATTCCACCCCCGTCGCCGCCGCCAGGGCCTACGACACCGCTGTTTTCTATCTCAGAGGACCCTCCGCTCGCCTTAATTTCCCGGACCTTCTCGCCGGAGAAGCCTGCGTGGCCGCCACCGCCGGGGACTTGTCGGCGGCTTCGATTCGCAAGAAAGCTATTGAAGTCGGTGCTCGAGTGGACGCCCTTCAGGCGGCCCGCCGCCACCACGCGTCAGCGGAGGCATCCGAGCGCATGCCTCCAGTCGCCGGTGCGTGCGTGGAGCGGGTTGACCTGAACAAGATGCCCGAACCCGAGAATCCGGAGTGTAACTGA 549 0.5829 MTLSPPPLPLSLIQTFLAFDTSQNLCFPLFLQIMEAPQAKKRGLEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAGEACVAATAGDLSAASIRKKAIEVGARVDALQAARRHHASAEASERMPPVAGACVERVDLNKMPEPENPECN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0228 182 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Prci5g0228 182 PRINTS Ethylene responsive element binding protein signature 88 108 IPR001471 GO:0003700|GO:0006355
Prci5g0228 182 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Prci5g0228 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 39 179 - -
Prci5g0228 182 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Prci5g0228 182 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Prci5g0228 182 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Prci5g0228 182 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Prci5g0228 182 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Prci5g0228 182 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0228 Prci-Chr5 3205877 3206678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0228 50 182 AP2-EREBP Transcription Factor Family AT2G23340 64.539 2.29e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci5g0228 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0228 K09286 - qsa:O6P43_033843 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0490 10 3344277 3345294 Prci5g0228 5 3205877 3206678 CCT
Prci5g0228 5 3205877 3206678 Prci5g0228 5 3205877 3206678 ECH