Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0225 ATGAGTGGCGAAATAATGTGGGATCTTAACGACTCGCCCGATCAGATAAACGGCGACGAATCAGAAGGCTGTTCTTCCTTGAATGATGATAAAGGAAAGCGGGTCGACGGATCTGTGTCCAATTCAAGTTCCTCCGCAGTGGTAATGGAGGAAGGATCCGCCGAAGAAGACGGCGAGGGAAGCCGAAGGATATCGGACGGAAAGGAGAGCGAGAAGAAGAAGAAGCGAAGCAGTAAGATATTCGGGTTTTGCGTGACCCATGAAGACTCATCCATGGATAGTGCTGAAGCTGAACCACCCGTAACCAGGCAGTTCATGCCGGTGGAGGAGGCTGACGACGTCGCCGGTGGCTCCTCCAGCCGAGCCTTTCCTCGGTCTCACTGGATAGGCCTAAAATTCAGCCAATCAGAAGCAAGTGGCGGTGGTGGGAAATCAGTGGAAGTAGTGTCGCCGTCGTCGTCGCAGCCTATGATTAAGAAAAGCCGGCGAGGCCCACGGTCAAGAAGCTCACAGTATAGAGGAGTGACCTTTTACAGAAGAACAGGTCGATGGGAATCTCACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCGGCTCGTGCATATGATAGAGCGGCCATCAAGTTCCGGGGAGTGGAAGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGGAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTACACAAGTGTGGAAGATGGGAGGCTCGACTGGGCCAATTTCTAGGCAAAAAGTATGTTTATCTCGGTCTGTTTGACACCGAGGTTGAAGCTGCTAGGGCTTATGATAAAGCAGCAATAAAGTGCAACGGCAAAGACGCCGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGAATCCTCAGGTAACGCTGATCACAATCTGGATTTAAGTCTGGGCAATTCGAGGTCAAATCACAATTCTAGGCAAGCATCGGTCAATCTGTTGCCAGAACAACCTAGTAGAAGTAACATGGAGTCTCATCGAAGAAATGTGCACGGCGAGAGTGAAACGCTGCGTCTTCTGAGTCAGACTCACCTTCAATCTCCAGCCACTGATGAAACTCAGAGATATGGACCCTACAAGAGTCCTGGACAACCTCAAATTCTTAACCATTTCCCGCATTTTCACCACCCAAATTATCGTATTCCTAGCAGCGGTCATGGAAACGCAGGTCGTTTGGGAAGTGATCTTTCATTGTCAATGAATAATCAAGAACGATGGCAATCTGGACATTCTCAGTATTTCTCTTCTGCTGCAGCATCATCAGGATTCCCACAGCAGATCACAACCTCATCACAAGCTTGGCTGCAGAAAAATGGGTTCCACACTTCTCTCATGAGACCCTCCTGA 1488 0.4845 MSGEIMWDLNDSPDQINGDESEGCSSLNDDKGKRVDGSVSNSSSSAVVMEEGSAEEDGEGSRRISDGKESEKKKKRSSKIFGFCVTHEDSSMDSAEAEPPVTRQFMPVEEADDVAGGSSSRAFPRSHWIGLKFSQSEASGGGGKSVEVVSPSSSQPMIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARLGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYENELNSESSGNADHNLDLSLGNSRSNHNSRQASVNLLPEQPSRSNMESHRRNVHGESETLRLLSQTHLQSPATDETQRYGPYKSPGQPQILNHFPHFHHPNYRIPSSGHGNAGRLGSDLSLSMNNQERWQSGHSQYFSSAAASSGFPQQITTSSQAWLQKNGFHTSLMRPS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0225 495 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 SMART rav1_2 171 233 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 SMART rav1_2 263 326 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 CDD AP2 262 322 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 MobiDBLite consensus disorder prediction 327 380 - -
Prci5g0225 495 FunFam AP2-like ethylene-responsive transcription factor 170 229 - -
Prci5g0225 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 407 - -
Prci5g0225 495 MobiDBLite consensus disorder prediction 138 160 - -
Prci5g0225 495 MobiDBLite consensus disorder prediction 1 78 - -
Prci5g0225 495 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 MobiDBLite consensus disorder prediction 327 367 - -
Prci5g0225 495 CDD AP2 171 228 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 FunFam AP2-like ethylene-responsive transcription factor 262 322 - -
Prci5g0225 495 MobiDBLite consensus disorder prediction 134 171 - -
Prci5g0225 495 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 Pfam AP2 domain 262 311 IPR001471 GO:0003700|GO:0006355
Prci5g0225 495 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677
Prci5g0225 495 MobiDBLite consensus disorder prediction 55 78 - -
Prci5g0225 495 SUPERFAMILY DNA-binding domain 262 322 IPR016177 GO:0003677
Prci5g0225 495 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700|GO:0006355
Prci5g0225 495 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700|GO:0006355
Prci5g0225 495 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0225 Prci-Chr5 3158055 3161148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0225 6 495 AP2-EREBP Transcription Factor Family AT4G36920 55.512 1.93e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci5g0225 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0225 K09284 - gmx:100792442 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0486 10 3316101 3319971 Prci5g0225 5 3158055 3161148 CCT
Prci5g0225 5 3158055 3161148 Prci5g0225 5 3158055 3161148 ECH