Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0224 ATGAGTGGCGAAATAATGTGGGATCTTAACGACTCGCCCGATCAGATAAACGGCGACGAATCAGAAGGCTGTTCTTCCTTGAATGATGATAAAGGAAAGCGGGTCGACGGATCTGTGTCCAATTCAAGTTCCTCCGCAGTGGTAATGGAGGAAGGATCCGCCGAAGAAGACGGCGAGGGAAGCCGAAGGATATCGGACGGAAAGGAGAGCGAGAAGAAGAAGAAGCGAAGCAGTAAGATATTCGGGTTTTGCGTGACCCATGAAGACTCATCCATGGATAGTGCTGAAGCTGAACCACCCGTAACCAGGCAGTTCATGCCGGTGGAGGAGGCTGACGACGTCGCCGGTGGCTCCTCCAGCCGAGCCTTTCCTCGGTCTCACTGGATAGGCCTAAAATTCAGCCAATCAGAAGCAAGTGGCGGTGGTGGGAAATCAGTGGAAGTAGTGTCGCCGTCGTCGTCGCAGCCTATGATTAAGAAAAGCCGGCGAGGCCCACGGTCAAGAAGCTCACAGTATAGAGGAGTGACCTTTTACAGAAGAACAGGTCGATGGGAATCTCACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCGGCTCGAGCGGCCATCAAGTTCCGGGGAGTGGAAGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGGAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTACACAAGTGTGGAAGATGGGAGGCTCGACTGGGCCAATTTCTAGGCAAAAAGTATGTTTATCTCGGTCTGTTTGACACCGAGGTTGAAGCTGCTAGGGCTTATGATAAAGCAGCAATAAAGTGCAACGGCAAAGACGCCGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGAATCCTCAGGTAACGCTGATCACAATCTGGATTTAAGTCTGGGCAATTCGAGGTCAAATCACAATTCTAGGCAAGCATCGGTCAATCTGTTGCCAGAACAACCTAGTAGAAGTAACATGGAGTCTCATCGAAGAAATGTGCACGGCGAGAGTGAAACGCTGCGTCTTCTGAGTCAGACTCACCTTCAATCTCCAGCCACTGATGAAACTCAGAGATATGGACCCTACAAGAGTCCTGGACAACCTCAAATTCTTAACCATTTCCCGCATTTTCACCACCCAAATTATCGTATTCCTAGCAGCGGTCATGGAAACGCAGGTCGTTTGGGAAGTGATCTTTCATTGTCAATGAATAATCAAGAACGATGGCAATCTGGACATTCTCAGTATTTCTCTTCTGCTGCAGCATCATCAGGATTCCCACAGCAGATCACAACCTCATCACAAGCTTGGCTGCAGAAAAATGGGTTCCACACTTCTCTCATGAGACCCTCCTGA 1476 0.4858 MSGEIMWDLNDSPDQINGDESEGCSSLNDDKGKRVDGSVSNSSSSAVVMEEGSAEEDGEGSRRISDGKESEKKKKRSSKIFGFCVTHEDSSMDSAEAEPPVTRQFMPVEEADDVAGGSSSRAFPRSHWIGLKFSQSEASGGGGKSVEVVSPSSSQPMIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARLGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYENELNSESSGNADHNLDLSLGNSRSNHNSRQASVNLLPEQPSRSNMESHRRNVHGESETLRLLSQTHLQSPATDETQRYGPYKSPGQPQILNHFPHFHHPNYRIPSSGHGNAGRLGSDLSLSMNNQERWQSGHSQYFSSAAASSGFPQQITTSSQAWLQKNGFHTSLMRPS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0224 491 CDD AP2 258 318 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 ProSiteProfiles AP2/ERF domain profile. 171 223 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 SMART rav1_2 259 322 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 SMART rav1_2 171 229 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 Pfam AP2 domain 171 214 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 Pfam AP2 domain 258 307 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 MobiDBLite consensus disorder prediction 323 376 - -
Prci5g0224 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 403 - -
Prci5g0224 491 MobiDBLite consensus disorder prediction 138 160 - -
Prci5g0224 491 MobiDBLite consensus disorder prediction 1 78 - -
Prci5g0224 491 MobiDBLite consensus disorder prediction 323 363 - -
Prci5g0224 491 SUPERFAMILY DNA-binding domain 258 318 IPR016177 GO:0003677
Prci5g0224 491 MobiDBLite consensus disorder prediction 134 171 - -
Prci5g0224 491 FunFam AP2-like ethylene-responsive transcription factor 170 225 - -
Prci5g0224 491 MobiDBLite consensus disorder prediction 55 78 - -
Prci5g0224 491 FunFam AP2-like ethylene-responsive transcription factor 258 318 - -
Prci5g0224 491 ProSiteProfiles AP2/ERF domain profile. 259 316 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 SUPERFAMILY DNA-binding domain 170 224 IPR016177 GO:0003677
Prci5g0224 491 Gene3D AP2/ERF domain 258 317 IPR036955 GO:0003700|GO:0006355
Prci5g0224 491 Gene3D AP2/ERF domain 170 225 IPR036955 GO:0003700|GO:0006355
Prci5g0224 491 PRINTS Ethylene responsive element binding protein signature 298 318 IPR001471 GO:0003700|GO:0006355
Prci5g0224 491 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0224 Prci-Chr5 3158055 3161149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0224 6 491 AP2-EREBP Transcription Factor Family AT4G36920 54.528 5.33e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci5g0224 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0224 K09284 - gmx:100792442 605.134