Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0216 ATGATGAACCATCAAGGAGGAATGAGTCACCTGAATTGTAATGCCAACAACCAAAGCAAGGTCAATCATCAGCTCATTCAAGCATCGGAATTGATACCTACTGCAAGTTCCTTTACTGCAGGTGATCATAGGTTCCCTGATCAGGTTTCGCGGTCAAATCATGCTGGTTATAATGAGAGTTTAAATAATTTTCCAAATAATGATCGCAGTGCTGCTGCTTTTCCTCATGAATCGTCTGAAGTGTTGAGGTTTTCTCCTTTAACTTCCCTTTCTGGAAATGTTAGAAGGTTCCCAGATGGGCTTTCTGGATCAAGTGACTTCCACTCTCAAGCAAGTAATAGTATTATTCCAAGCATTGGTCACAGTGCTGGTGTTGTTCCTCAAAATGTTGACTCAGGTGCAGAATATGCTCGGAACAATTATTATAACGATTTGAATTTGTCACTAAGTCTCGGCCCTCATTCATCTGAACTAGAAAATCAGAATACCAGCAGCTCTTGCACAACTGTAATTGATCTTGGAAGATCAAGTTCTGCAGTGCAAGAGCAAAGTTTGGATAGCAGCTCAGTTAGTATGAGGCGTTTATCCTGCAAGAGAAAGTCTCCTGAACATGCTGTCAGGGAATTGTTAGTAGGTGAGAGTTCTAGCTCAGCTGCACAAACTGGATTTTCCAAGCGGTGGGCTTCTGAAGTCCATGGCAATAATGGGCTAAACATATGTACTCCTTGCACTAGCCCTGTTAGTCATCAAGAACGGTCTGAGACCATTATTGGTCATAGTCCTATAGGGCCAGTTTCTGACGTTCAGCATTTGAATGGAGCTAGACTATCTGAAAACTTCCGAAGTAACATTCATCTTCATACAACTGCAAATCAACAAACTTTTCTACCAACCAGCATTTTGTCATCAGGTTACAGGAGGGATGCTCATATCCAGTTACCCAGTCAGTCACCTTTGTATGGCCAAGTCAACCATCCTCCATTCTTCAGATCTGCAGAAAGTTCTATTAATCCACTGTTCTCAGTGCAGCCTGATGGGCATGTTCCTATTTTTCATGAAACTCCACAGGCTACCCCCTGGATTAACATGATGAGACCAAGAAGTGTTTTTTCTTCATTTTTGCCTGTCAATACTACAGTGGAAAGTGATGCTGTGGCACCCTTTCATTACCCAAGACACATAACTGAAAACATTATGCTTAGCCGCCAAATTGGAGTGAGAAATTGGGTACATGATGCAAGAAACTCACATTTTGTTAATGGAGCTGCAAACTTCCATGGAGATTTTTTCTGCCCTCTTCATGGTTGTGTTTCTGGTATAATTCATTCAGAAAATGCCCCTACTTGGTTCTCAGGGTTCAGTTTTGCTGATCGTTACATGCAGACACCATCAAGAATTGTGAATCACCCTGTGCTTGCAACTACTGGTTTCCCTTGGCCCAGTCACAGCCCAGCAGATTCAGATCTTTCAGCTGTCTTACAGGAACTGCGCTTTGCTGTTGGATTTGTTAATACCGTATCTCAGAATCAGCATGCATCAGGAGCAAGATCTGAGAATCATGCTGCCTTTAATTTTACATGGTCACTTGCTAATGCTCGAAATAGAATGAGGCTGAGGCCTGAGAATCTGCATGCATCAGAAGCAAGACCCGAGAATCAAGATGATAGCTATTATGATCACCTTTATCATTCGTTTTGGTCGCCTGCTAATGCTGCAAACAGAAGGAGGCTGAGTATTGAGCTTCACCATAGGCTGGCACATATGCGCAGTGAAGACCCCTTGCAGCCTGTGATGATTCCACGGGAATTGAGGATGTTGGACCATTCAATTATAATGGATATCCTTCAGGAGCATGCCAATGTAGATGAGCTGCATTTTGATTTAGACGACTGGACAAATGAGGATCTTGCTGCCCTAGCAGAGCCTATTGAGGCGGGCCTGAGTGAGGAAATGATTCTCAGCCACCTTAGGCAGGAAAAATTCCATCTCATCCCAGCTGGGTCTGAGGAAAACGAATGCTGCTGCATATGTCAGGAGGAGTACCATGAAAATGAAGATCTGGGCAAGCTGTGCTGTGCCCACAGATTTCACGTAGACTGTATCAAGCCATGGCTCGAGCTGAAGAACATCTGCCCCATTTGCAAACAAGTCGCACTTCCTCTTTTTCTTGATTCTCCTTAA 2181 0.4347 MMNHQGGMSHLNCNANNQSKVNHQLIQASELIPTASSFTAGDHRFPDQVSRSNHAGYNESLNNFPNNDRSAAAFPHESSEVLRFSPLTSLSGNVRRFPDGLSGSSDFHSQASNSIIPSIGHSAGVVPQNVDSGAEYARNNYYNDLNLSLSLGPHSSELENQNTSSSCTTVIDLGRSSSAVQEQSLDSSSVSMRRLSCKRKSPEHAVRELLVGESSSSAAQTGFSKRWASEVHGNNGLNICTPCTSPVSHQERSETIIGHSPIGPVSDVQHLNGARLSENFRSNIHLHTTANQQTFLPTSILSSGYRRDAHIQLPSQSPLYGQVNHPPFFRSAESSINPLFSVQPDGHVPIFHETPQATPWINMMRPRSVFSSFLPVNTTVESDAVAPFHYPRHITENIMLSRQIGVRNWVHDARNSHFVNGAANFHGDFFCPLHGCVSGIIHSENAPTWFSGFSFADRYMQTPSRIVNHPVLATTGFPWPSHSPADSDLSAVLQELRFAVGFVNTVSQNQHASGARSENHAAFNFTWSLANARNRMRLRPENLHASEARPENQDDSYYDHLYHSFWSPANAANRRRLSIELHHRLAHMRSEDPLQPVMIPRELRMLDHSIIMDILQEHANVDELHFDLDDWTNEDLAALAEPIEAGLSEEMILSHLRQEKFHLIPAGSEENECCCICQEEYHENEDLGKLCCAHRFHVDCIKPWLELKNICPICKQVALPLFLDSP 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0216 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 719 IPR013083 -
Prci5g0216 726 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 167 719 IPR045191 GO:0061630
Prci5g0216 726 SUPERFAMILY RING/U-box 668 719 - -
Prci5g0216 726 ProSiteProfiles Zinc finger RING-type profile. 674 715 IPR001841 -
Prci5g0216 726 Pfam Ring finger domain 674 715 IPR001841 -
Prci5g0216 726 SMART ring_2 674 714 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0216 Prci-Chr5 3076964 3084359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0216 560 719 C3H Transcription Factor Family AT2G15530 39.881 9.71e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0216 - - pcin:129295749 1444.87