Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0213 ATGGGGGATATGTACGGCTATGGAAAGAGTAACGTTATTCCCTCTTCTTCGTCTTCAACCTCACCTCCAGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTCCTCCCTCCTCCTCCGACGCACCGCCACTGTCTTCCCTCCTCACCCACATGCCTGAAAACGCACCCAACGCTTCCGAGCATGAAAATGCCAGCCTTTCATACTCATCTTCTCTTCTTCAAGATGTAATCTCAGGCGTTGATTCTGCCTCTAAAAACCGTGCCTTTCTCTCATCTTACGTGAAGGGGGGTTCTGCTGCAAATGTGTCGTCCTCCTCGGTTGGAGTAAGCGAGAATGAGACTGATGAGTATGATTATGACAGTGAGGAGGGTACGGTTGAAGCAATGGTTCCAAAGTCATCTCCTAGGCGTTCATCGAAGAGAAGCAGAGCTGCAGAAGTTCATAACTTGTCTGAGAAGCGAAGGAGGAGTCGGATCAACGAAAAGCTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGACAAGGCTTCGATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTACAGATGCTGTCTGTAAGAAACGGATTGAATTTGCTTCCTACGTGCTTCGCTGAAGGCTTGCAGCCTCTGCAACTGTCTCAGATGAGAGTTGAGTATGGCGAAGAAGAAGACGGGTCGTGTCCTTTAAACTTAACTACTACTATGCCTCTTGACAATGAATCCAATCTATCTAACAAACGCACTGTGCCCTCTCCTTTAAATATAATCAATTCGGAAACACCTTTTGGGTTGGATTCTCAAATCATAGGGCACCTTAGACCCTTTGAACTCAAAGCATCATCTTCTGAGATATGCAGGGAGGACTTATATCAGCGCAAACAATTAAATGCAGAAGATTCAAATACCAATCCTATGGGTGATTCTCAGGCTGTACGAGAATTTGAGTCAGGTACGTTGGCTTCAGTATCACTCGCCTTTGATAAGCAAAACGACCGGAGTGAAGAATTGAAAACATGCATTGCGGGAAGAGATTAG 1068 0.4504 MGDMYGYGKSNVIPSSSSSTSPPDEFSLFLHQILLPPPSSSDAPPLSSLLTHMPENAPNASEHENASLSYSSSLLQDVISGVDSASKNRAFLSSYVKGGSAANVSSSSVGVSENETDEYDYDSEEGTVEAMVPKSFXPRRSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSVRNGLNLLPTCFAEGLQPLQLSQMRVEYGEEEDGSCPLNLTTTMPLDNESNLSNKRTVPSPLNIINSETPFGLDSQIIGHLRPFELKASSSEICREDLYQRKQLNAEDSNTNPMGDSQAVREFESGTLASVSLAFDKQNDRSEELKTCIAGRD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0213 356 FunFam Basic helix-loop-helix transcription factor 141 204 - -
Prci5g0213 356 Gene3D - 141 205 IPR036638 GO:0046983
Prci5g0213 356 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 317 IPR031066 -
Prci5g0213 356 SMART finulus 152 201 IPR011598 GO:0046983
Prci5g0213 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 205 IPR036638 GO:0046983
Prci5g0213 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Prci5g0213 356 MobiDBLite consensus disorder prediction 1 65 - -
Prci5g0213 356 CDD bHLH_AtPIF_like 147 208 IPR047265 -
Prci5g0213 356 MobiDBLite consensus disorder prediction 44 65 - -
Prci5g0213 356 MobiDBLite consensus disorder prediction 10 26 - -
Prci5g0213 356 Pfam Helix-loop-helix DNA-binding domain 150 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0213 Prci-Chr5 3061078 3063927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0213 114 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.765 2.28e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0213 HLH 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0213 - - pcin:129295751 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g0213 5 3061078 3063927 Prci5g0213 5 3061078 3063927 ECH