Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0208 ATGGACGTGGATGACAGAAGCATGGACATGATGGCAATGATGATGCAGATGGAAAAGTTTCCTGAATTCTCTGAACCTTTTTACCCAGAACCTCCATTCTGCACCACCACCAGCAGTCAGCCCATACTCCACAATAACATGATCAACCCTCCTCCACCAAATCCCTTCGCCACCAACACTGCTATTAATCCAATCCCACAACCCGTGACACCACACCTAGTTCAACCCAAAGAGGTTGGGGTCGGGAATATTAATACTGATATTAACCCCAATGCTTGTTCTTCTGAGAAAAAGAATTCCATGGCGGCGATGAGAGAGATGATATTCCGTATAGCAGTGATGCAACCTATTCACATAGACCCTGAATCCATCAAGCCTCCGAAGCGAAGGAACGTGAAGATATCGAAGGATCCACAGAGCGTGGCGGCGAGGCACAGGAGGGAGAGAATAAGCGAGAGGATTAGGATTCTGCAGAGATTGGTTCCAGGAGGGACGAAAATGGACACGGCATCAATGTTGGACGAAGCTATACATTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACGCTGGAACAAGCAGGAGCGAGTAGGGCCATGGGTTTTGGCGTACCCAGCCTCAATCATCACATCAATAATTATTCTACTTTCATGAAGGATTATCATCAACCGTGCCAGATGGTGGGTGGTTCTATGCAAATGCTAAGCTGA 708 0.4718 MDVDDRSMDMMAMMMQMEKFPEFSEPFYPEPPFCTTTSSQPILHNNMINPPPPNPFATNTAINPIPQPVTPHLVQPKEVGVGNINTDINPNACSSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRAMGFGVPSLNHHINNYSTFMKDYHQPCQMVGGSMQMLS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0208 235 Pfam Helix-loop-helix DNA-binding domain 143 183 IPR011598 GO:0046983
Prci5g0208 235 FunFam BHLH transcription factor 137 200 - -
Prci5g0208 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 193 IPR036638 GO:0046983
Prci5g0208 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Prci5g0208 235 CDD bHLH_AtIND_like 135 191 - -
Prci5g0208 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 39 234 IPR045843 GO:0003700|GO:0006355
Prci5g0208 235 Coils Coil 173 193 - -
Prci5g0208 235 Gene3D - 133 199 IPR036638 GO:0046983
Prci5g0208 235 SMART finulus 140 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0208 Prci-Chr5 3003248 3004461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0208 17 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 58.152 1.02e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci5g0208 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0208 - - qsa:O6P43_033826 214.927