Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0207 ATGGAGCAGCGTAAACTTGTGGTTTTGGGTATTCCTTGGGAGGTCGATACTGAGGGGTTGAAAGAATATATGAGCAAATTTGGCGATTTGGAAGATTGCGTTGTTATGAAGGAGAGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTTGATGATGCTAAGAAAGCATTATCAAGCGAACATGTTCTTGGCAATAGGATGCTCGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTAAAGAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTTACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGGGAGATAACAGATTTATACATGCCAAAGGACCAGGGCTCAAAATCACACCGTGGAATTGGTTTTATAACTTTTGCTAGTGCAGAATCTGTGGAGAATTTAATGACAGATACTCATGAATTGGGAGGTTCTACTGTGGTGGTTGATCGAGCAACACCAAAGGAAGATGATATGAGGCCTATTGGCAGAATGTCACAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTCGATATGCAGCACTTGGTGCTCCTACTCTGTATGACCATCCTGGTTCAGTTTATGGAAGGGGGGAACCTGTTCGGGGAATGGGCAAAAAAATTTTTGTTGGTCGTCTTCCCCCTGAAGCAACAGCTGATGATCTTCGCCAGTATTTTGGAAGATTTGGCCGTATATTAGATGTCTATGTTCCAAAGGATCCCAAGAGAGCAGGCCACAGAGGTTTTGGTTTTGTAACTTTTGCTGAAGATGGTGTGGCAGATCGTGTCTCTCGGAGGTCTCATGAGATTTGTGGACATCAGGTTGCTATAGATTCAGCTACACCTCTTGATGATGCTGGGCCGAGTTCGAATTTTATGATGAGCAGTGTGGATACTTTTGGGGGATATGGTGGTCCCATGCGCACCTATGGGAGGATGTATGGCAGCCTGGACTTTGATGATTGGGGTTATGGAATTGGGAGTGCGAGACCATCAAGAACAGATTGGAGGTATAGGCCATACTAG 1080 0.4463 MEQRKLVVLGIPWEVDTEGLKEYMSKFGDLEDCVVMKERSTGRSRGFGYVTFASVDDAKKALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKSHRGIGFITFASAESVENLMTDTHELGGSTVVVDRATPKEDDMRPIGRMSQGGYGAYNAYISAATRYAALGAPTLYDHPGSVYGRGEPVRGMGKKIFVGRLPPEATADDLRQYFGRFGRILDVYVPKDPKRAGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPSSNFMMSSVDTFGGYGGPMRTYGRMYGSLDFDDWGYGIGSARPSRTDWRYRPY 359
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0207 359 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Prci5g0207 359 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Prci5g0207 359 Gene3D - 222 304 IPR012677 -
Prci5g0207 359 Gene3D - 1 86 IPR012677 -
Prci5g0207 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Prci5g0207 359 SUPERFAMILY RNA-binding domain, RBD 224 324 IPR035979 GO:0003676
Prci5g0207 359 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Prci5g0207 359 Gene3D - 87 194 IPR012677 -
Prci5g0207 359 SMART rrm1_1 5 76 IPR000504 GO:0003723
Prci5g0207 359 SMART rrm1_1 93 164 IPR000504 GO:0003723
Prci5g0207 359 SMART rrm1_1 225 296 IPR000504 GO:0003723
Prci5g0207 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Prci5g0207 359 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 224 318 - -
Prci5g0207 359 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Prci5g0207 359 FunFam RNA-binding family protein isoform 1 221 304 - -
Prci5g0207 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 280 IPR000504 GO:0003723
Prci5g0207 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 158 IPR000504 GO:0003723
Prci5g0207 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Prci5g0207 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci5g0207 Prci-Chr5 2976784 2981744 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0207 6 273 Eukaryotic Initiation Factors Gene Family AT2G36660 23.723 3.35e-13 68.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0207 K14411 - qsa:O6P43_024629 677.167