Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0204 ATGACGCAGCGGTCGGCGCCGGCCCCGTTTCTGACGAAGACGTATCAGTTGGTGGACGACGAGCGGACCAACGATGTGATATCGTGGAGCGAAAGCGGCGACACCTTCGTGGTGTGGAAGCAAGCGGATTTTGCAAAGGATTTGCTTCCCAATTATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAACACTTATGGATTCCGAAAGATAGTCCCCGACAAATGGGAATTCGCTAACGAGAATTTCAAGCGAGGACGCAAGGAGCTCCTGTCCGAGATCAAACGCCGGAAGACTCTGACACAACCATCGGGGAAGTCAGGCAGCGGCGGTGGCGGCAATTCCGCGTCGAACTCTGGAGCCGGCGACGACGCGGGGTCCACGTCCACTTCGTCAAGTCATTCGAAGAGCAAGGCGGCGTCGGCGGAGACGAAGACGGGGCCGGAATACGCAGAGTTATCAGGAGAGAACGAGAAACTGAGAAAAGATAACGAAATGCTGAGCTGGGAGCTAGCGGAAGCGAAGAAGCAGTGCGAGGAGCTGGTGAGTTTTCTGACGGAGTACCTGAAAGTGGGGCCGGATCAGATTAATCGTATAATAATGCGGGAAGGAACAGGTGGGTCCAGCTGCGAAGAAGAGGAGGAAGGAAAGAAGGTGGTAGGTGAAGAAGAAGAGGGAGAAAGTCTGAAGCTATTTGGGGTTTGGTTGAGAGGTGAGAAAGAAAGGACGGAGGAGGAGAAAATGAGGGCTGCCGCCACCAACCTCCACCACAAGAGAGGCCGCGAAGACCAGATGGCTTTTGGTGGGCCTCACCCATCCAAGGAGCTTAAGACTATGCATCTCGGTGCTTCCCCTGTCAATGTCATGATCAATTGA 882 0.5374 MTQRSAPAPFLTKTYQLVDDERTNDVISWSESGDTFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGRKELLSEIKRRKTLTQPSGKSGSGGGGNSASNSGAGDDAGSTSTSSSHSKSKAASAETKTGPEYAELSGENEKLRKDNEMLSWELAEAKKQCEELVSFLTEYLKVGPDQINRIIMREGTGGSSCEEEEEGKKVVGEEEEGESLKLFGVWLRGEKERTEEEKMRAAATNLHHKRGREDQMAFGGPHPSKELKTMHLGASPVNVMIN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0204 293 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 Gene3D - 145 191 - -
Prci5g0204 293 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 205 IPR027725 -
Prci5g0204 293 Coils Coil 152 179 - -
Prci5g0204 293 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 MobiDBLite consensus disorder prediction 96 160 - -
Prci5g0204 293 MobiDBLite consensus disorder prediction 256 287 - -
Prci5g0204 293 MobiDBLite consensus disorder prediction 103 144 - -
Prci5g0204 293 FunFam Heat stress transcription factor B-4 2 100 - -
Prci5g0204 293 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Prci5g0204 293 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci5g0204 293 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0204 Prci-Chr5 2924186 2926860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0204 3 249 HSF AT4G36990 57.480 1.58e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci5g0204 HSF_DNA-bind 3.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0204 K09419 - vvi:100247320 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0445 10 2999775 3002373 Prci5g0204 5 2924186 2926860 CCT
Prci5g0204 5 2924186 2926860 Prci5g0204 5 2924186 2926860 ECH