Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0179 ATGTCATCATCGAAAACTCCGTGTGCCGCGTGCAAGCTTCAGAGGCGAAAATGCACCCAAGAATGCGTCTTCGCACCATACTTCCCGCCGGACAACCCTCGCAAGTTCTCTACCGTCCACCAAGTGTTCGGCGCCAGCAATGTTTCTAAGCTTCTCACTGAGCTAAACGTGGCTCACCGCGAAGAAGCCGTCAGGTCCTTAGCTTACGAAGCCGAGGCTCGGCTCCGGGACCCAGTCTACGGCTGCGTGGGACTCATTTCCGTTCTCCAGCAAAGGCTTAAGCACGTACAGAGTGAGGTCGACAAAGCGAAGAAGGAGCTCGCTACTTATATAGGCCCTCAGGCTCTACAGCCCATGGTTCCCGTTTTAGACCCTCATCATGGAGTGATTCCGTTGCACCCTCACCACCAGGGCAATGTTTATGGTCCCACCGTTTTCCCCAACAACAATAACATGCTGCCGCAGTCCATGGCGTCTCGCGGCGGACAATTGGTGATTCGTGAACCTCAGCAGCAGCAGCAGCAGCGTGCTGAGCAGCAGATGTTGGGGACGCAGTTAACGACGGATATGGATGTGAGGCAAGTGCAAGAATTCTTTGGGATTTATGATCAGCAGCAACAACAGCCGCCGCCGCCGCAGCAGCAAGACTTTATGAGGTATGGTGGCGGAGGGGGCATTGAAATGGGATCGGTTTCGGGGAGTGGATTCAGCCAAGCTCCAGAGATGTCGCCTTCGCTGGCTCTGAACACATACGACAACGCTTACCATTCGATGCAACTACAGCAAGCTCAAGGAGGAGATCATCCTCAGCAGCAGAATCAGCAACACCATCATCATACTCCGCGTCATCATCCTCAAGAGTTTCTTCCGCCGCAGCACCAGAATCAGCATCAGCATCATCAGCCTCTGCACAACCAGCTTCAGGAACAGCTACTTCTATCGCCACAGCAACAGCAGCCACAGCAACAACTTCAGGAGCAGATGCTTCTACCGCAGCAACCGCACCATCAGCAGAATCAGTGTCACCATCAGCAGCCTTCGCATCATCAGGTTCAGGAGCAGCTATTTCTTCCGCCACAGCAGGATCAGCATCACCCTCATCCTCCTCAGCACCATCAGCTTCAGGAACAGCTTCTTCTACCGCCCCAGCAACAGCAACACCAAGAGCAATCGGAAGGTTTGGATGGTAGGAGCGTTGGTCCTTCTTCCTGA 1212 0.5404 MSSSKTPCAACKLQRRKCTQECVFAPYFPPDNPRKFSTVHQVFGASNVSKLLTELNVAHREEAVRSLAYEAEARLRDPVYGCVGLISVLQQRLKHVQSEVDKAKKELATYIGPQALQPMVPVLDPHHGVIPLHPHHQGNVYGPTVFPNNNNMLPQSMASRGGQLVIREPQQQQQQRAEQQMLGTQLTTDMDVRQVQEFFGIYDQQQQQPPPPQQQDFMRYGGGGGIEMGSVSGSGFSQAPEMSPSLALNTYDNAYHSMQLQQAQGGDHPQQQNQQHHHHTPRHHPQEFLPPQHQNQHQHHQPLHNQLQEQLLLSPQQQQPQQQLQEQMLLPQQPHHQQNQCHHQQPSHHQVQEQLFLPPQQDQHHPHPPQHHQLQEQLLLPPQQQQHQEQSEGLDGRSVGPSS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0179 403 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Prci5g0179 403 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 306 - -
Prci5g0179 403 MobiDBLite consensus disorder prediction 376 403 - -
Prci5g0179 403 MobiDBLite consensus disorder prediction 261 304 - -
Prci5g0179 403 Coils Coil 86 106 - -
Prci5g0179 403 MobiDBLite consensus disorder prediction 359 403 - -
Prci5g0179 403 MobiDBLite consensus disorder prediction 332 351 - -
Prci5g0179 403 MobiDBLite consensus disorder prediction 289 304 - -
Prci5g0179 403 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Prci5g0179 403 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0179 Prci-Chr5 2555954 2559484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0179 1 280 AS2 family AT5G66870 44.211 2.71e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci5g0179 LOB 3.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0179 - - pcin:129311998 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g0179 5 2555954 2559484 Prci10g0423 10 2806536 2808637 CCT
Prci5g0179 5 2555954 2559484 Prci5g0179 5 2555954 2559484 ECH