Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0173 ATGGATGGATCAACTGGTCGTGGTGGTACTGGTGTGGACATGTATCTACCAAATTATAAATTGGGGAAAACACTTGGTATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCACGTTTTGACAGGTCACAAAGTTGCTATTAAGATCCTCAACAAACGTAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCCTCACATCATAAGACTTTATGAAGTCATAGAAACTCCAGCTGACATATACGTTGTTATGGAGTATGTCAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGCAGATTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGCTCATAGAGACTTGAAGCCCGAGAATTTGCTGTTGGACTCCAAATGCAATGTCAAGATTGCAGATTTTGGTTTGAGCAACGTAATGGTTGATGGTCACTTCCTTAAGACAAGTTGTGGGAGCCCAAACTATGCTGCTCCTGAGGTAATATCTGGAAAATATTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATACGCTCTTCTTTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCAAATCTTTTCAAGAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATCTGATCCCAAGGATGCTTGTGGTTGATCCTATGAAAAGGGTGACCATACCTGAAATTCGTCAACACCCATGGTTCCAAGCTCATCTCCCTCGTTATTTGGCAGTGCCACCACCAGATACTTCACAGCAAGCCAAAAAGATTGATGAGGAAATTCTTCAGGAAGTGGTTAATATGGGATTTGATAGGAATCAGTTGGTTGAATCTCTTCGCAACAGGTTACAGAATGAGGGTACCGTGGCATATTATTTGCTATTGGACAACCGGTTCCGTGTTTCGAGTGGCTATCTTGGTGCTGAGTTTCAAGAGAGTATGGATACTGGTTGTAATCGGATGCATCCTAGTGAAGTTGCTGCTCCAGCTGTTGGGAACCGCTTTCCAGGGTACATGGATTATCAAGGAACTGGGTTGAGGCCACAGTTCCCTGTGGAGAGAAAATGGGCTCTTGGGCTTCAGCAGTCTCGAGCCCATCCGCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTGAATGTGTGCTGGAAGAAGATTGGACACTATAACATGAAGTGCCGGTGGGTCGCTAGCATTCTGGGTCATCGTGAAGGAATGGTGAATGATCATAATCATTACTTTGGAGATGATTCTGCTATTGCTGAGAATGACACTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAATGCAGCTTTACAAAACCCGTGAAGAGAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTCTTCTTGGATCTTTGTGCTTCTTTCCTCGCACAGCTACGTGTCCTCTAG 1539 0.4256 MDGSTGRGGTGVDMYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNKRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVAHRDLKPENLLLDSKCNVKIADFGLSNVMVDGHFLKTSCGSPNYAAPEVISGKYYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRVTIPEIRQHPWFQAHLPRYLAVPPPDTSQQAKKIDEEILQEVVNMGFDRNQLVESLRNRLQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDTGCNRMHPSEVAAPAVGNRFPGYMDYQGTGLRPQFPVERKWALGLQQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASILGHREGMVNDHNHYFGDDSAIAENDTVSKSNVVKFEMQLYKTREEKYLLDLQRVQGPQFLFLDLCASFLAQLRVL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0173 512 Gene3D Transferase(Phosphotransferase) domain 1 11 349 - -
Prci5g0173 512 Pfam Kinase associated domain 1 469 511 IPR001772 -
Prci5g0173 512 SMART uba_6 294 331 IPR015940 -
Prci5g0173 512 FunFam Non-specific serine/threonine protein kinase 395 510 - -
Prci5g0173 512 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Prci5g0173 512 CDD STKc_AMPK_alpha 16 271 - -
Prci5g0173 512 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Prci5g0173 512 PANTHER SERINE/THREONINE KINASE 18 336 - -
Prci5g0173 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Prci5g0173 512 CDD AMPKA_C 389 509 - -
Prci5g0173 512 CDD UBA_SnRK1_plant 293 333 - -
Prci5g0173 512 Gene3D Kinase associated domain 1, KA1 395 510 - -
Prci5g0173 512 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0173 512 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 463 511 IPR001772 -
Prci5g0173 512 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0173 512 Pfam UBA/TS-N domain 293 329 IPR015940 -
Prci5g0173 512 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci5g0173 512 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Prci5g0173 512 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Prci5g0173 512 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Prci5g0173 512 SUPERFAMILY KA1-like 328 511 IPR028375 -
Prci5g0173 512 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0173 Prci-Chr5 2519954 2526469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0173 19 271 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 3.16e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Prci5g0173 Pkinase 8.9e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0173 K07198 - gmx:100796687 948.732