Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0172 ATGGCGAGGAGGAGGAAGGCTGTGGAAATAGAGGAAGAGAGAAGCATGAAATGGGATGAGATGGTGAAGGAAGCTGAAGCACTGGGACTGAGCAGAAGAGCCAGGAAGCGTTTTGTTGGGGTCAGACAAAGGCCTTCAGGCAGATGGGTTGCTGAGATTAAGGATACCATTCAGAAGATTCGGGTTTGGTTGGGAACTTTCGACACTGCAGAGGAAGCAGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAATACTAGGACCAATTTTTGGCCCTGTTCTTATTCTTCTTCAACCCCTGTTCTTTCCTCTAAGATCAGCAATCTCCTCCTTCAAAGGCTTAAAGCAAGAAACAACTCTTGCTCTGATTTTTCTTCTTCTGCTTCTCTTCTCGTTGATCAACAAGAAAAGCAGCAAGCAGATGTGTATAATGAAGAAGAAGCTGCGGATTTTTCTATTGACCAATTGACTGATTTCCTTAATGATCCTGAAGATTACAGCGCAGGCAACAATGACTTTAGTCAGTTCACTAATCACAGTGCGCAAGTTGACTTCTTTACCGGCAGTCTTGAATCATGTTTGACTGAAACAGATGAGTTCAGGGGAAGAGAAATGGGGTTGGAAAATGATGTCAGCAACATTGCTGACTTGAATTCAGGAGGAAAAAGAGAGGAAGTAAATGAGGAAGTAATGAGGCATCTGGGTGCGCAGGATTTTGAGTTTATGGACAAGGTTGCTCCATCATGTTACTATTCACCTTTTGAGATGGCTGAAGAGATGGAGGATCCTGTGGTGGAAGCAGAGAGCTACAGTGATGAGCCTTCCATGCTCAGAGCCGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCCCTCTATGCATTCAATGGAATACCTGAATGCTTGAAGCTGAAGCTAGGATCAGCAAACTGCAAGGGAAAAGGGGCTTCTGATCATTTAACCAACATCCACAAAGCTTGTAGCAGCAAGGAGAAATCTGAGGAGAATAAGGAGGGCAGAGAAGACATGGGAGTAATGGAAAGTAGAGAAGAAGAAAAACCAGAGAAATTTAACGAGGCTGAGTGTTCTTCATCTTCCATCGGTGTGGATGGTGAATTGTTGCTCTGGAATTCACTGGACCTTCCCCCCATATGTTTCGTTAACTGA 1182 0.4475 MARRRKAVEIEEERSMKWDEMVKEAEALGLSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSTPVLSSKISNLLLQRLKARNNSCSDFSSSASLLVDQQEKQQADVYNEEEAADFSIDQLTDFLNDPEDYSAGNNDFSQFTNHSAQVDFFTGSLESCLTETDEFRGREMGLENDVSNIADLNSGGKREEVNEEVMRHLGAQDFEFMDKVAPSCYYSPFEMAEEMEDPVVEAESYSDEPSMLRAAMKRMKYERKFSASLYAFNGIPECLKLKLGSANCKGKGASDHLTNIHKACSSKEKSEENKEGREDMGVMESREEEKPEKFNEAECSSSSIGVDGELLLWNSLDLPPICFVN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0172 393 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Prci5g0172 393 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Prci5g0172 393 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Prci5g0172 393 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Prci5g0172 393 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Prci5g0172 393 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 294 - -
Prci5g0172 393 MobiDBLite consensus disorder prediction 332 368 - -
Prci5g0172 393 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Prci5g0172 393 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Prci5g0172 393 MobiDBLite consensus disorder prediction 332 364 - -
Prci5g0172 393 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Prci5g0172 393 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0172 Prci-Chr5 2517738 2519824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0172 31 113 AP2-EREBP Transcription Factor Family AT5G19790 71.084 5.08e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci5g0172 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0172 K09286 - qsa:O6P43_004449 447.588