Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0143 ATGGGAATAGCAACACCCCCAGTCCTGCCGCCAATTCTCTCACTCTCCACCAAGCCCCAGCATTCCTTTTCTTCCATATTAGACTCCAATTCTATGTCCCAAGATTATCACCAGGGAATCTTCACGTTCTCGAATGGGTACGAGAGATCCACTCTAACCCAGCACCAGCAACAACAGCAGCAGCACCAGCAGCAACAGTTAGCGCAGCAGATCCGGAGAGACAAGGTGAGGGTACAAGGTGGGTTGGACCCGCCGCCGCCTCTTGTGGGCATAGAGGAAGAAGAATCTGTAAACCTTCCCGTGTATGAAACCGGAGGAATGTTATCCGAGATGTTCAATTTCCCTCCTCCCGGCGCTAGCGCCACTGAATTGTTGGAACAACAGCACCAACCGGCGACGGCCATGTATCGGACCTCCAGGTCGCAACCTCTGGCCACCGATTGGTACAGACAAGGGATGTTAAGCGGGTTGGGAGATTCAAAGAATCAGAATAGCCGTGACAATAGTGGTATGCTAGAGCATCATCATCCTCATCCTCAGATTTCAAGCATGAATGCGCACTCAGCTGCCGCCATGCAGCTTTTTCTGATGAACCCGCAAACGAGATCGCCTTCTCCTACTCAGAACCACACTCCTAATTCGTCTTCTCTCCAAGGCTTCAGTGCTCAGGGAGGGAGTTTCGGTCAATTCACATGGGCTCCTCATAGTTCCCAGCAAGGAGCAGCGGCCGCGACTGCTAATCCGCCTCAAATTGGAGGGGTTATGGAAGCTCAAGGTCTTTCCTTATCCTTATCATCATCGTTGCAACACTTGGAAGCCGCGAAAGCTGAGGAACTGAGGATGGGAGACAGCGGGTTTCTGTATTACAACCAAGGAGGATCCGGAGGGTCTTCGTCGGCTCAGTATCCGTATAAGACATTGCATTTCCAAGGGCCCGTCGGAGTCGCTCAGAACCACCAGGGACATGTGGGGTTCGGGTCATCATTAGGGGTGGTAAATGTGCTGAGGAATTCAAAGTACGTGAAGGCCGCGCAAGAATTGCTCGAAGAATTCTGCAGTGTTGGGAGAGGGCAGTTCAAGAGGAACAAGTTCACCAGGCAAAACTCAAACCCTAGTTCAAATCCTGGCGGCGGCGGTGGCGGTTCTTCATCTTCATTAAAGGATCCTCCTCCTTTGTCGTCGGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTCCTATCCATGCTTGACGAGGTGGATCGGAGATACAACCACTATTGCGAACAAATGCAAATGGTGGTGAACTCATTTGACATGGTGATGGGATTCGGTTCGGCAGTGCCATACACGGCATTGGCTCAGAAGGCGATGTCTCGCCATTTCCGGTGCCTGAAGGATGCGATAACGGCGCAACTGAGGCACAGTTGCGAGCTGCTGGGAGAGAAAGACGGAGCAGGAAGCTCAGGTTTAACCAAAGGAGAGACCCCAAGGCTGAAACTTCTCGAACAAAGCCTGAGGCAGCAGAGAGCCTTCCACCAGATTGGCATGATGGAACAAGAAGCCTGGCGACCACAAAGAGGCCTTCCCGAGCGATCCGTCAACATTCTGCGAGCCTGGCTCTTCGAGCATTTTCTTCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGCCTCTCGAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTCCGGCTGTGGAAACCTATGATAGAAGAAATGTACCAACAAGAACTTAAAGAAGTAGAAGGAGAAGAGAGAGGAGAGAAGAACCAAAGCAACAGCAACAGCAACGTCGCACAAACTCCAACCACAGCAGCAACAACTTCAACAGCAACAGCGCCACCACCATCCACAACAACAACAACAACAACGACACTCACAACAGCAGCAACAGCGGCAGGCAAAAGATCCCAAATCAAAGCTTCTGATAGCGACCATTCACTCATTGCAATCAATACCCAGCCCTTCTCGGAAACCCAACCAAACCACTCAGCCTCTGCCATCACCACCACTCCAACCGCCGCAGTTGCCGCCACTTCTGAGGTGGCGCCACCGGCATCTCAGTGTTATGACTCAGACCTGCCCCCGCACAGATCAATGGTTGCAGATGACACGTGTCGCCATGGCAGCCTCATTGCAGCAGATTACGGGACCGCTTCTGGTAATTCTGACATTGCTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCGCTCACCCTAGGGCTACGCCACGCCGGGAACATCCCTGAGAAAGCGCCTCCTTTCTCTGTTAGAGACTTTGGAGGCATTTGA 2328 0.5193 MGIATPPVLPPILSLSTKPQHSFSSILDSNSMSQDYHQGIFTFSNGYERSTLTQHQQQQQQHQQQQLAQQIRRDKVRVQGGLDPPPPLVGIEEEESVNLPVYETGGMLSEMFNFPPPGASATELLEQQHQPATAMYRTSRSQPLATDWYRQGMLSGLGDSKNQNSRDNSGMLEHHHPHPQISSMNAHSAAAMQLFLMNPQTRSPSPTQNHTPNSSSLQGFSAQGGSFGQFTWAPHSSQQGAAAATANPPQIGGVMEAQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYYNQGGSGGSSSAQYPYKTLHFQGPVGVAQNHQGHVGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFTRQNSNPSSNPGGGGGGSSSSLKDPPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLRHSCELLGEKDGAGSSGLTKGETPRLKLLEQSLRQQRAFHQIGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEEMYQQELKEVEGEERGEKNQSNSNSNVAQTPTTAATTSTATAPPPSTTTTTTTTLTTAATAAGKRSQIKASDSDHSLIAINTQPFSETQPNHSASAITTTPTAAVAATSEVAPPASQCYDSDLPPHRSMVADDTCRHGSLIAADYGTASGNSDIASTLIRFGTTAGDVSLTLGLRHAGNIPEKAPPFSVRDFGGI 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0143 775 Gene3D - 520 582 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 362 390 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 153 181 - -
Prci5g0143 775 Pfam Associated with HOX 334 464 IPR006563 -
Prci5g0143 775 SUPERFAMILY Homeodomain-like 519 584 IPR009057 -
Prci5g0143 775 Coils Coil 580 600 - -
Prci5g0143 775 FunFam BEL1-like homeodomain protein 4 520 582 - -
Prci5g0143 775 SMART HOX_1 517 581 IPR001356 GO:0003677
Prci5g0143 775 MobiDBLite consensus disorder prediction 362 399 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 51 73 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 590 655 - -
Prci5g0143 775 CDD homeodomain 517 578 IPR001356 GO:0003677
Prci5g0143 775 ProSiteProfiles 'Homeobox' domain profile. 514 577 IPR001356 GO:0003677
Prci5g0143 775 MobiDBLite consensus disorder prediction 599 655 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 51 72 - -
Prci5g0143 775 MobiDBLite consensus disorder prediction 199 249 - -
Prci5g0143 775 SMART prehox3 329 465 IPR006563 -
Prci5g0143 775 MobiDBLite consensus disorder prediction 199 245 - -
Prci5g0143 775 Pfam Homeobox KN domain 534 573 IPR008422 GO:0003677|GO:0006355
Prci5g0143 775 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 206 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0143 Prci-Chr5 2211520 2218068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0143 738 775 Homeobox Transcription Factor Family AT2G23760 71.795 6.23e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci5g0143 POX 3.1e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0143 - - pcin:129311153 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0354 10 2432591 2439157 Prci5g0143 5 2211520 2218068 CCT
Prci5g0143 5 2211520 2218068 Prci5g0143 5 2211520 2218068 ECH
Prci5g0143 5 2211520 2218068 Prci10g0354 10 2432591 2439157 ECH