Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0142 ATGGGTTGGTTTACAAAGTTGATTAAGGGCTCCAACCATAAAATTTCAAGGGGCCAATATCACGGAAAATATGGAAATGACAAAATTTGGGATGGTCATCGTAATTCAGCGGATGATTTGACTGATATTGAGAAAGAAGACATCGACCGTGCTATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGTATGATTCACGGTCAGAAGATGAAGAACTTTGTCCACTTGATGAGGAGGAAGATGAACATCTTGGTAAAGTTCGAGAAGAGGAAGCTGAAAGTCTTGCTAACAATCAAAAGGAGGAAGACGAACATCACACAAAGCTTCAACTTGAGGAAGATGAACAACTTGCGAGAGCAATTCAAGAGAGTTTAAGCATGGGTTCTCCTCCTCGATACAATACGGGTTCTTTATTTCAACCATTTTCTATGTTTTCCACTGGATACAGGATCTGTGCTGGCTGCAATGCTGAGATCGGCCATGGAAGATTTTTAAGCTGTATGGGAGGTGTCTGGCATCCAGAATGTTTTCGTTGTCATGCTTGCAATCTACCAATTACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCCACAAATTCAAATGGCCTCATTGAATATAGAGCACATCCTTTCTGGCAACAAAAATACTGTCCATCACATGAACGTGACGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAGGGACGCAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCGATAATGGATACTCATGAATGCCAGCCACTCTACCTTGAGATACAAGAGTTTTATGAAGGCTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCATTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTAAGGAGACCGAGGATCGGAGCAGGCTACCGAATCGTAGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTATTTTATATGGCCTTCCGAGGCTGTTAACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTAAGGCTTAAAGGTTACCCCAATCTGAGCCCTCAAGTTGAAGAAGGAATTTGCCAAGTTTTGGCTCATATGTGGTTGGATTCAGAAATGTATTCTGGATCTGGGAGCGATGGTGCATCATCCTCATCATCATCTTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCATCAAAGAAAGGCAAAAGATCCGACTTTGAGAAGAAACTGGGCGAGTTTTTTAAACACCAGATTGAGTCAGATGCCTCATCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTGCACAAGTATGGGCTTAGAAGGACCCTTGACCATATCCAACTAACAGGAAGTTTTCCGTTATGA 1587 0.4304 MGWFTKLIKGSNHKISRGQYHGKYGNDKIWDGHRNSADDLTDIEKEDIDRAIALSLSEEDQKGKKVIEYDSRSEDEELCPLDEEEDEHLGKVREEEAESLANNQKEEDEHHTKLQLEEDEQLARAIQESLSMGSPPRYNTGSLFQPFSMFSTGYRICAGCNAEIGHGRFLSCMGGVWHPECFRCHACNLPITDYEFSMSSNRPYHKSCYREQHHPKCDVCKNFIPTNSNGLIEYRAHPFWQQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIVDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPQVEEGICQVLAHMWLDSEMYSGSGSDGASSSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDASSAYGDGFRLGNQAVHKYGLRRTLDHIQLTGSFPL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0142 528 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 238 - -
Prci5g0142 528 MobiDBLite consensus disorder prediction 446 474 - -
Prci5g0142 528 Pfam LIM domain 157 212 IPR001781 -
Prci5g0142 528 ProSitePatterns LIM zinc-binding domain signature. 157 191 IPR001781 -
Prci5g0142 528 FunFam Protein DA1-related 1 151 210 - -
Prci5g0142 528 PANTHER PROTEIN DA1-RELATED 2 3 527 IPR045218 -
Prci5g0142 528 SMART uim 43 62 IPR003903 -
Prci5g0142 528 SMART uim 117 136 IPR003903 -
Prci5g0142 528 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Prci5g0142 528 Gene3D Cysteine Rich Protein 148 215 - -
Prci5g0142 528 CDD LIM_DA1 157 209 - -
Prci5g0142 528 MobiDBLite consensus disorder prediction 84 113 - -
Prci5g0142 528 Pfam Protein DA1 306 522 IPR022087 -
Prci5g0142 528 MobiDBLite consensus disorder prediction 446 470 - -
Prci5g0142 528 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
Prci5g0142 528 MobiDBLite consensus disorder prediction 63 113 - -
Prci5g0142 528 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 182 - -
Prci5g0142 528 SMART lim_4 156 208 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0142 Prci-Chr5 2139427 2147525 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci5g0142 DA1-like 9.7e-107 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0142 - - gmx:100817969 885.56