Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0141 ATGGGTTGGTTTACAAAGTTGATTAAGGGCTCCAACCATAAAATTTCAAGGGGCCAATATCACGGAAAATATGGAAATGACAAAATTTGGGATGGTCATCGTAATTCAGCGGTAATCACAGTTTCTGCTTCTATGGCAAACTGGGTGCAGGATGATTTGACTGATATTGAGAAAGAAGACATCGACCGTGCTATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAAGTTATTGAGTATGATTCACGGTCAGAAGATGAAGAACTTTGTCCACTTGATGAGGAGGAAGATGAACATCTTGGTAAAGTTCGAGAAGAGGAAGCTGAAAGTCTTGCTAACAATCAAAAGGAGGAAGACGAACATCACACAAAGCTTCAACTTGAGGAAGATGAACAACTTGCGAGAGCAATTCAAGAGAGTTTAAGCATGGGTTCTCCTCCTCGATACAATACGGGTTCTTTATTTCAACCATTTTCTATGTTTTCCACTGGATACAGGATCTGTGCTGGCTGCAATGCTGAGATCGGCCATGGAAGATTTTTAAGCTGTATGGGAGGTGTCTGGCATCCAGAATGTTTTCGTTGTCATGCTTGCAATCTACCAATTACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCCACAAATTCAAATGGCCTCATTGAATATAGAGCACATCCTTTCTGGCAACAAAAATACTGTCCATCACATGAACGTGACGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCAAGGGACGCAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCGATAATGGATACTCATGAATGCCAGCCACTCTACCTTGAGATACAAGAGTTTTATGAAGGCTTAAACATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCATTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTAAGGAGACCGAGGATCGGAGCAGGCTACCGAATCGTAGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTATTTTATATGGCCTTCCGAGGCTGTTAACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTAAGGCTTAAAGGTTACCCCAATCTGAGCCCTCAAGTTGAAGAAGGAATTTGCCAAGTTTTGGCTCATATGTGGTTGGATTCAGAAATGTATTCTGGATCTGGGAGCGATGGTGCATCATCCTCATCATCATCTTCATCATCATCCTCACCTTCCTCCTCTTCCTCCACGTCATCAAAGAAAGGCAAAAGATCCGACTTTGAGAAGAAACTGGGCGAGTTTTTTAAACACCAGATTGAGTCAGATGCCTCATCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTGCACAAGTATGGGCTTAGAAGGACCCTTGACCATATCCAACTAACAGGAAGTTTTCCGTTATGA 1626 0.4311 MGWFTKLIKGSNHKISRGQYHGKYGNDKIWDGHRNSAVITVSASMANWVQDDLTDIEKEDIDRAIALSLSEEDQKGKKVIEYDSRSEDEELCPLDEEEDEHLGKVREEEAESLANNQKEEDEHHTKLQLEEDEQLARAIQESLSMGSPPRYNTGSLFQPFSMFSTGYRICAGCNAEIGHGRFLSCMGGVWHPECFRCHACNLPITDYEFSMSSNRPYHKSCYREQHHPKCDVCKNFIPTNSNGLIEYRAHPFWQQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPRIGAGYRIVDMITEPYRLIRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPQVEEGICQVLAHMWLDSEMYSGSGSDGASSSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDASSAYGDGFRLGNQAVHKYGLRRTLDHIQLTGSFPL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0141 541 CDD LIM 197 272 - -
Prci5g0141 541 CDD LIM_DA1 170 222 - -
Prci5g0141 541 MobiDBLite consensus disorder prediction 76 126 - -
Prci5g0141 541 Gene3D Cysteine Rich Protein 161 228 - -
Prci5g0141 541 Pfam Protein DA1 319 535 IPR022087 -
Prci5g0141 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 251 - -
Prci5g0141 541 FunFam Protein DA1-related 1 164 223 - -
Prci5g0141 541 ProSitePatterns LIM zinc-binding domain signature. 170 204 IPR001781 -
Prci5g0141 541 SMART uim 56 75 IPR003903 -
Prci5g0141 541 SMART uim 130 149 IPR003903 -
Prci5g0141 541 MobiDBLite consensus disorder prediction 459 487 - -
Prci5g0141 541 SMART lim_4 169 221 IPR001781 -
Prci5g0141 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 195 - -
Prci5g0141 541 ProSiteProfiles LIM domain profile. 168 228 IPR001781 -
Prci5g0141 541 PANTHER PROTEIN DA1-RELATED 2 3 540 IPR045218 -
Prci5g0141 541 MobiDBLite consensus disorder prediction 459 483 - -
Prci5g0141 541 MobiDBLite consensus disorder prediction 97 126 - -
Prci5g0141 541 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 130 149 IPR003903 -
Prci5g0141 541 Pfam LIM domain 170 225 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0141 Prci-Chr5 2139427 2147529 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci5g0141 DA1-like 1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0141 - - gmx:100817969 876.7