Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0137 ATGAGTGGGTTAAGAATGAATGTGATTGATCAGTGTTGGAGATTGAACCCAGAATGGAGGAGACATAGGATACAGCTTGCCATGTGCTCTGTGGGCTATGCAGGCAAGATGACAAATAACATTGGGAAGGACGTGATCCACTATAAAGTCACGGATCCAAATGATGACCCCGTTAACCCAAAACCCGGAACATTGAGATACGGAGCCTCTGTGATCCAAGGCAAGGTTTGGATCACCTTCCAAAGAGACATGCACATCAAGCTTGCTAGACCCCTTCTTATCAGCAGCTTCACTGCTATTGATGGCCGAGGCGTTGAGGTCCACATTGCTCACAACGCATGCTTCATGATCTACAAGGCAACCAACATTATCATCCATGGGCTTAGGATCCATCACTGCAAGCCTCAAGGTCCAGGGATGGTGATGGGTGGTGAAGGGAAGGTGATATCTCTGGGTCATGTAGATGGAGACGCAGTCAGATTGGTTTCCGCTTCAAAGATTTGGATTGATCACAACACTCTCTACAGATGCTCAGACGGCCTTCTGGATGTCACGAGAGGTTCCACTGACGTGACGGTGTCCAATAATTGGTTCAGAGATCAGGACAAGGTCATGCTCCTTGGGCACGATGATGGTTATATCAGAGACCAGAATATGAAGGTCACTGTAGTCTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATACGACATGGGTATGCTCATGTAGCCAACAATCTGTACCAAGGATGGCTACAATACGCCATTGGTGGCAGCATGGAGCCCAGCCTCAAAAGTGAAGCTAATCTCTTCATAGCACCAACCTCAGGAAGTAAAGAGGTGACGTGGAGGAAAAGTAGTAATGGGAATGACAAAGCATTGGAATTTCATTCCGTGAGGGACGTCTTTGAGAACGGAGCTTCCTTCACTGTAACAAAAGGTGGACAAGTGCCAAAGCCTAATTATAACGCCAACAAAGATTCAAAGTTGCAGATGCTTCATGTGTAA 1017 0.468 MSGLRMNVIDQCWRLNPEWRRHRIQLAMCSVGYAGKMTNNIGKDVIHYKVTDPNDDPVNPKPGTLRYGASVIQGKVWITFQRDMHIKLARPLLISSFTAIDGRGVEVHIAHNACFMIYKATNIIIHGLRIHHCKPQGPGMVMGGEGKVISLGHVDGDAVRLVSASKIWIDHNTLYRCSDGLLDVTRGSTDVTVSNNWFRDQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKSSNGNDKALEFHSVRDVFENGASFTVTKGGQVPKPNYNANKDSKLQMLHV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 297 321 IPR018082 -
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 29 46 IPR018082 -
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 91 107 IPR018082 -
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 155 176 IPR018082 -
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 257 276 IPR018082 -
Prci5g0137 338 PRINTS Pollen allergen Amb family signature 235 254 IPR018082 -
Prci5g0137 338 PANTHER PECTATE LYASE 18-RELATED 6 329 IPR045032 GO:0030570
Prci5g0137 338 Gene3D - 6 337 IPR012334 -
Prci5g0137 338 SMART amb_all 83 280 IPR002022 -
Prci5g0137 338 Pfam Pectate lyase 104 274 IPR002022 -
Prci5g0137 338 SUPERFAMILY Pectin lyase-like 29 313 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0137 Prci-Chr5 2120798 2122412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0137 37 284 Polysaccharide Lyase AT5G09280 73.790 3.80e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0137 K01728 - gmx:100780437 605.905