Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0132 ATGGCGAATGGGTTAGGGGAATCGATGAGCACGTCTTCTCAAAGGCCAGCTTGCTCAGGGAGTGATTCGAATGATGCTGGGGATTTTGAATGCAATATTTGTTTCGATTTAGCCCAAGACCCAGTTATCACTCTGTGTGGTCATCTATTCTGTTGGCCATGTCTCTATCAATGGCTCCACCATCACTCGCATTCTCAAGAATGTCCGGTTTGTAAGGCTCTTGTACAGGAAGAGAAGCTGGTTCCATTATATGGGAGGGGTAAAACATCGACTGATCCCAGAACAAAGTCTTACCCTGGAATGGAGATTCCCCGTCGGCCTGCAGGGCAGAGGCCTGAAGAAACTCCTACAGCACAAGCCACTCCTCCACCACAAGCCAATCCGTTTGGAAATCATCGCGTTGGATTGATGGGAGGATTCATACCCATGGCAACTGGAAGGATGGGAAATTTCACCCTTTCTACGGCCTTTGGTGGTTTTATCCCATCTCTTCTTAATATTCAATTCCATGGCTTTCAAGATGCCACGGTTTATGGAACAACTTCTGGTTATCCGTTTGGATATAATGCCTTTCATGGAGGACACGCACGTGATTTCACCCGCCCAACTGGTCAGGGGAACCGGCATGAAGACAATGTTTTGAAGAATCTCTTTTTGTTGATTGGTGTGCTAGTCCTCCTTACTTTAATTTTCGGGTGA 699 0.4678 MANGLGESMSTSSQRPACSGSDSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYQWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTSTDPRTKSYPGMEIPRRPAGQRPEETPTAQATPPPQANPFGNHRVGLMGGFIPMATGRMGNFTLSTAFGGFIPSLLNIQFHGFQDATVYGTTSGYPFGYNAFHGGHARDFTRPTGQGNRHEDNVLKNLFLLIGVLVLLTLIFG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0132 232 MobiDBLite consensus disorder prediction 1 21 - -
Prci5g0132 232 SUPERFAMILY RING/U-box 27 84 - -
Prci5g0132 232 MobiDBLite consensus disorder prediction 85 127 - -
Prci5g0132 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 92 IPR013083 -
Prci5g0132 232 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Prci5g0132 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Prci5g0132 232 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Prci5g0132 232 SMART ring_2 31 71 IPR001841 -
Prci5g0132 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Prci5g0132 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 85 - -
Prci5g0132 232 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0132 Prci-Chr5 2084958 2086611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0132 21 231 C3H Transcription Factor Family AT2G23780 60.465 1.24e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0132 K10666 - gmx:100814783 375.941