Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0124 ATGAATAGTCAGCATCCTAGTGAAGCTCATATGGCCCTCTTCTCTCACCTATGCCCAGCTGGTTCATACACTCAAATCATCCCTCAACAAGGGGAAGCGAAACGAAGACGACGTCGTAAGAAGGAGAAAAACCAAGCTGTGGGTACCAAGAAGAGGAAGCTAAGCGAAGAGCAAGCGAGTTTTCTGGAGCTAAACTTCGGGAACGAACATAAATTAGAGTCGGAGAGAAAGGACAGGCTGGCATCGGAGCTTGGCCTGGATCCTCGTCAAGTGGCCGTGTGGTTTCAAAACAGAAGGGCTCGTTGGAAGAATCAGAAGTTGGAGGAAGCCTACTCCAACCTCAAGAAACTCCACGAAACCACCCTCCTCGAGAAAGCCCACCTTGAAACTGAGGTGTCGAAGCTGAAAGAGCAGCTTTCAGGAGCAGAGAAGGAGATCCAGAGGCTGTTGGAGCGAGGCGAGAGATCAGTGTCAAACGAAACCGCGAATAGCCCGAGTTCAACGCACACAATGGAAGCTATGGACCCACTGTTTTTGGGGGAATTCGGAGTCGAATGTTTTGATGACGATGATTTCTTGTTATACCCAACAGATTATTACATGAATTGCTTGGAATGGCTCAGTTTGTACATGTGA 636 0.4843 MNSQHPSEAHMALFSHLCPAGSYTQIIPQQGEAKRRRRRKKEKNQAVGTKKRKLSEEQASFLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNQKLEEAYSNLKKLHETTLLEKAHLETEVSKLKEQLSGAEKEIQRLLERGERSVSNETANSPSSTHTMEAMDPLFLGEFGVECFDDDDFLLYPTDYYMNCLEWLSLYM 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0124 211 SUPERFAMILY Homeodomain-like 49 108 IPR009057 -
Prci5g0124 211 MobiDBLite consensus disorder prediction 33 47 - -
Prci5g0124 211 FunFam homeobox-leucine zipper protein ATHB-40 42 113 - -
Prci5g0124 211 Coils Coil 97 152 - -
Prci5g0124 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 164 IPR045224 GO:0003700
Prci5g0124 211 Pfam Homeodomain 50 104 IPR001356 GO:0003677
Prci5g0124 211 CDD homeodomain 50 106 IPR001356 GO:0003677
Prci5g0124 211 SMART HOX_1 48 109 IPR001356 GO:0003677
Prci5g0124 211 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Prci5g0124 211 Gene3D - 44 114 - -
Prci5g0124 211 MobiDBLite consensus disorder prediction 28 54 - -
Prci5g0124 211 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Prci5g0124 211 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Prci5g0124 211 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0124 Prci-Chr5 1925436 1927421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0124 1 211 Homeobox Transcription Factor Family AT2G18550 50.661 1.18e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Prci5g0124 Homeodomain 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0124 K09338 - gmx:100809616 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0328 10 2229553 2231455 Prci5g0124 5 1925436 1927421 CCT
Prci5g0124 5 1925436 1927421 Prci5g0124 5 1925436 1927421 ECH