Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0101 ATGTCTGGTTGCGGCAGCTACGAGGGGCACGTGATGGGAGCGTGCGCGTGTGGCATGTTTCACGGCCAACCAAATTCCTTCCCTGTTCCATACACCAACCAAAATTCCTATGCCTGTGACTACGACGAATCCGACGTGTACTCTTCCTACACGCCCTCCTCCTCTTCCGTAGACTGCACGCTCTCTCTCGGAACCCCTTCCACGCGTTTAACTCAGGACGAAGACAGGCGTGGCGGCCGCGGCGAACGACGTCGTTCCGTCTCCAACATGTGCTGGGATTTGTTACAGTCCAATCAATCCCACAGTAGCAAGTCTGGCAAAGGAAGCTCCTCCTCCAGCGATCCCCTTCTCGCCCGTCGCTGTGCCAATTGCGACACCACCTCCACGCCTCTCTGGAGAAATGGCCCGAGAGGTCCAAAGTCACTGTGCAATGCCTGTGGGATCAGATACAAGAAGGAAGAGAGGAAAGCCGCCGCGGCCACGGCTTCGGTGTCGAGCGGCGTTATGGAGTCTCAGGCGATGTACGGCCAGCAAGACAATTACTGGTACGCGCAGTCGTACTCACAGGACGGGGAATGCCGTGTTACTCGCAAGGGATGGTGGAAGACAGCAATGAAGACTCCGACAACGGCATGCCTTTCGTCTCGTGGAGACTCAACGTATCAGACAGGCCGAGCCTTGTCCATGACTTTACAAGATGAACAATTAAAAGCTAATTGTAACAGGAGCACCACTTTTACTAGAAACTAG 750 0.5493 MSGCGSYEGHVMGACACGMFHGQPNSFPVPYTNQNSYACDYDESDVYSSYTPSSSSVDCTLSLGTPSTRLTQDEDRRGGRGERRRSVSNMCWDLLQSNQSHSSKSGKGSSSSSDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERKAAAATASVSSGVMESQAMYGQQDNYWYAQSYSQDGECRVTRKGWWKTAMKTPTTACLSSRGDSTYQTGRALSMTLQDEQLKANCNRSTTFTRN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0101 249 ProSiteProfiles GATA-type zinc finger domain profile. 115 151 IPR000679 GO:0006355|GO:0043565
Prci5g0101 249 PANTHER GATA TRANSCRIPTION FACTOR 18 12 203 IPR044272 GO:0003700|GO:0009908
Prci5g0101 249 MobiDBLite consensus disorder prediction 62 85 - -
Prci5g0101 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 155 - -
Prci5g0101 249 CDD ZnF_GATA 120 152 IPR000679 GO:0006355|GO:0043565
Prci5g0101 249 Gene3D - 117 178 IPR013088 GO:0006355|GO:0008270
Prci5g0101 249 MobiDBLite consensus disorder prediction 70 85 - -
Prci5g0101 249 Pfam GATA zinc finger 121 155 IPR000679 GO:0006355|GO:0043565
Prci5g0101 249 ProSitePatterns GATA-type zinc finger domain. 121 146 IPR000679 GO:0006355|GO:0043565
Prci5g0101 249 SMART GATA_3 115 167 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0101 Prci-Chr5 1694976 1696607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0101 4 179 C2C2-Gata Transcription Factor Family AT3G50870 42.500 5.85e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci5g0101 GATA 5.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0101 - - pcin:129312177 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0290 10 1843402 1844993 Prci5g0101 5 1694976 1696607 CCT
Prci5g0101 5 1694976 1696607 Prci5g0101 5 1694976 1696607 ECH