Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0089 ATGGGAACCGATTATGGTGAAGTAGTGGAGACATTACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACAGAGCTAATGAAATTAGTTGATAGAGTCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTTTGTGCTTGCTAAACAGTGCGGTTGAGAAGGCCAAACTTCTTCTGCAGCATTGCAGCGAGGCTAGCAAGCTCTACCTGGCTGTGACTGGTGATAGGGTACTCTCAAGATTCCAAAAAGCAAGAAGATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGTATCGTTCCAGTGATGTTGGCGGCAGAGATTTCTCAAATAATCGATGATCTTGCATGCATGACTATTGTATTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAATTGCTCCAGCAAGGTGCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCATAAAGCCATCTTAACAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCAAATGAGCAGGCAAAACAGAAGATCTTGAGATATCTCTGGTATCTATTGAAAAAGCATGGAAACCTTATCACAGGAGAACACATGGAAATGGTCTATCCTTATAGTGAAGGACCGATTTTAACTGAGAACTGCAGTCAACATTCTCGACTTAACAATTATGTTCAACCAGGAAGATGCTTTAATTATGAGCAGTTTGAAACTCGCAACAGTGAGATGGGTAGAGCAGAACCACCTGAGGAATACAAATGTCCGATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATATATGTCCAAAAACCAAGAAGAAACTGTCCCACTTGTCATTGACTCCGAACACTGTTATGAAGGACTTAATATCTAAGTGGTGCAGAAATAATGGGCTCACACTTGCTGAACCACAAAAGAGAGCAAAAGAATTTCGCTCATGGGAGGTTTCCTCAACTTCCATTAGGAGCTTTGGCAGTTCCATGAATGATCTGCACTTGCCAGTAGATCTTAGCGGCATGTCACTTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGAACAATGACTTAAACTTGATGTTGAAAAAGGCCGCTGATAATTCTTGGAGTCATCTGGTTAATGTGCATGTGCATGACACTGATCTGAAAATTTTGTCTAAATTCCAAGACCTTGAATGGGATTCTCAGTGCCAGGCCATTAAAGATCTGACAGATCGTTTGAAGTGCAATTGCCAAGCTTCTTGTTCTGTGTCTTCTGAAAATTTTGTTGAACCTCTCAGCAGATTTTTGAGCAGTGCATATGAACATCAAGATGTAAAAGCTCTGAGAACTGGAACTCAATTGTTAATGGAATTTGATCTATCTTATTTAAGAGAAGATACATTTGGTATGTTGGCTAGTTTTCTTCATTTAGAAGTGATAGGTGAAGCTCTTTCCATAATGGAAAAACTATCTGCGAATCAGCATAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCCATCTTAAAGATCCTGGACTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGTATAATTTGTCTTTCAACAGTGAAAGTTGCTCCCACATGGCATCTCTCGGGTGCATCCCAAAATTGATGCCCTTTTTTAAGGATCAGGCCCTTTTAAGATACTGTATATGTATATTGAAAAGCCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGCGGGAACTAGCGGATGCATATCTGCAGTTGCTGAGATAATTGACACTGGCGGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGCGAAGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACTATCTCCGTCAATGGAAGTGACAATGGAAAGGCGAGTGCATTGGAATTGCTCCGTCTCCTTGGGGATGTTCGATATGAAGAAGAGTCTGTGAAACCTAGATTTGACACTCAAGATACTAACGATCATCCTCAAGAAAAGAAATCGTCGAAGACCTCTGAATTTCTGAAGAAACTATCACCTTTCTTAAAAAGCAAGAGGTGA 2235 0.4067 MGTDYGEVVETLPNIRSFKVHRKMCTELMKLVDRVSRIFPDIEAARPRCSSGIQSLCLLNSAVEKAKLLLQHCSEASKLYLAVTGDRVLSRFQKARRSLEQSLGQVQSIVPVMLAAEISQIIDDLACMTIVLDSAEEEAGRVVKELLQQGASTSDSIENSEIKALQFAAARLNITSHKAILTEKRSIKKLLDKVGPNEQAKQKILRYLWYLLKKHGNLITGEHMEMVYPYSEGPILTENCSQHSRLNNYVQPGRCFNYEQFETRNSEMGRAEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDICPKTKKKLSHLSLTPNTVMKDLISKWCRNNGLTLAEPQKRAKEFRSWEVSSTSIRSFGSSMNDLHLPVDLSGMSLGSLDYSQGSDSSHARNNDLNLMLKKAADNSWSHLVNVHVHDTDLKILSKFQDLEWDSQCQAIKDLTDRLKCNCQASCSVSSENFVEPLSRFLSSAYEHQDVKALRTGTQLLMEFDLSYLREDTFGMLASFLHLEVIGEALSIMEKLSANQHNKATIATSSVLTSILKILDSDSREFQEQAIRILYNLSFNSESCSHMASLGCIPKLMPFFKDQALLRYCICILKSLCDIEVGRVSVAGTSGCISAVAEIIDTGGVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISVNGSDNGKASALELLRLLGDVRYEEESVKPRFDTQDTNDHPQEKKSSKTSEFLKKLSPFLKSKR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0089 744 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Prci5g0089 744 Pfam Kinesin-associated protein (KAP) 528 639 - -
Prci5g0089 744 MobiDBLite consensus disorder prediction 707 744 - -
Prci5g0089 744 SMART arm_5 660 700 IPR000225 GO:0005515
Prci5g0089 744 SMART arm_5 537 577 IPR000225 GO:0005515
Prci5g0089 744 SMART arm_5 578 616 IPR000225 GO:0005515
Prci5g0089 744 MobiDBLite consensus disorder prediction 707 731 - -
Prci5g0089 744 PANTHER U BOX DOMAIN-CONTAINING 23 705 - -
Prci5g0089 744 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Prci5g0089 744 SUPERFAMILY RING/U-box 262 347 - -
Prci5g0089 744 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Prci5g0089 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 347 IPR013083 -
Prci5g0089 744 CDD RING-Ubox_PUB 274 326 IPR045210 -
Prci5g0089 744 Gene3D - 432 743 IPR011989 -
Prci5g0089 744 SUPERFAMILY ARM repeat 434 698 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0089 Prci-Chr5 1612172 1617543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0089 1 717 U-box Gene Family AT4G36550 36.070 1.35e-123 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0089 - - psat:127120233 856.67