Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0088 ATGGGAACCGATTATGGTGAAGTAGTGGAGACATTACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACAGAGCTAATGAAATTAGTTGATAGAGTCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTTTGTGCTTGCTAAACAGTGCGGTTGAGAAGGCCAAACTTCTTCTGCAGCATTGCAGCGAGGCTAGCAAGCTCTACCTGGCTGTGACTGGTGATAGGGTACTCTCAAGATTCCAAAAAGCAAGAAGATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGTATCGTTCCAGTGATGTTGGCGGCAGAGATTTCTCAAATAATCGATGATCTTGCATGCATGACTATTGTATTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAATTGCTCCAGCAAGGTGCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCATAAAGCCATCTTAACAGAGAAACGATCTATTAAGAAGTTGCTAGATAAAGTTGGACCAAATGAGCAGGCAAAACAGAAGATCTTGAGATATCTCTGGTATCTATTGAAAAAGCATGGAAACCTTATCACAGGAGAACACATGGAAATGGTCTATCCTTATAGTGAAGGACCGATTTTAACTGAGAACTGCAGTCAACATTCTCGACTTAACAATTATGTTCAACCAGGAAGATGCTTTAATTATGAGCAGTTTGAAACTCGCAACAGTGAGATGGGTAGAGCAGAACCACCTGAGGAATACAAATGTCCGATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATATATGTCCAAAAACCAAGAAGAAACTGTCCCACTTGTCATTGACTCCGAACACTGTTATGAAGGACTTAATATCTAAGTGGTGCAGAAATAATGGGCTCACACTTGCTGAACCACAAAAGAGAGCAAAAGAATTTCGCTCATGGGAGGTTTCCTCAACTTCCATTAGGAGCTTTGGCAGTTCCATGAATGATCTGCACTTGCCAGTAGATCTTAGCGGCATGTCACTTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGAACAATGACTTAAACTTGATGTTGAAAAAGGCCGCTGATAATTCTTGGAGTCATCTGGTTAATGTGCATGTGCATGACACTGATCTGAAAATTTTGTCTAAATTCCAAGACCTTGAATGGGATTCTCAGTGCCAGGCCATTAAAGATCTGACAGATCGTTTGAAGTGCAATTGCCAAGCTTCTTGTTCTGTGTCTTCTGAAAATTTTGTTGAACCTCTCAGCAGATTTTTGAGCAGTGCATATGAACATCAAGATGTAAAAGCTCTGAGAACTGGAACTCAATTGTTAATGGAATTTGTGAGTAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGATACATTTGGTATGTTGGCTAGTTTTCTTCATTTAGAAGTGATAGGTGAAGCTCTTTCCATAATGGAAAAACTATCTGCGAATCAGCATAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTTCCATCTTAAAGATCCTGGACTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGTATAATTTGTCTTTCAACAGTGAAAGTTGCTCCCACATGGCATCTCTCGGGTGCATCCCAAAATTGATGCCCTTTTTTAAGGATCAGGCCCTTTTAAGATACTGTATATGTATATTGAAAAGCCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGCGGGAACTAGCGGATGCATATCTGCAGTTGCTGAGATAATTGACACTGGCGGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGCGAAGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACTATCTCCGTCAATGGAAGTGACAATGGAAAGGCGAGTGCATTGGAATTGCTCCGTCTCCTTGGGGATGTTCGATATGAAGAAGAGTCTGTGAAACCTAGATTTGACACTCAAGATACTAACGATCATCCTCAAGAAAAGAAATCGTCGAAGACCTCTGAATTTCTGAAGAAACTATCACCTTTCTTAAAAAGCAAGAGGTGA 2253 0.4075 MGTDYGEVVETLPNIRSFKVHRKMCTELMKLVDRVSRIFPDIEAARPRCSSGIQSLCLLNSAVEKAKLLLQHCSEASKLYLAVTGDRVLSRFQKARRSLEQSLGQVQSIVPVMLAAEISQIIDDLACMTIVLDSAEEEAGRVVKELLQQGASTSDSIENSEIKALQFAAARLNITSHKAILTEKRSIKKLLDKVGPNEQAKQKILRYLWYLLKKHGNLITGEHMEMVYPYSEGPILTENCSQHSRLNNYVQPGRCFNYEQFETRNSEMGRAEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDICPKTKKKLSHLSLTPNTVMKDLISKWCRNNGLTLAEPQKRAKEFRSWEVSSTSIRSFGSSMNDLHLPVDLSGMSLGSLDYSQGSDSSHARNNDLNLMLKKAADNSWSHLVNVHVHDTDLKILSKFQDLEWDSQCQAIKDLTDRLKCNCQASCSVSSENFVEPLSRFLSSAYEHQDVKALRTGTQLLMEFVSNCGKDLSYLREDTFGMLASFLHLEVIGEALSIMEKLSANQHNKATIATSSVLTSILKILDSDSREFQEQAIRILYNLSFNSESCSHMASLGCIPKLMPFFKDQALLRYCICILKSLCDIEVGRVSVAGTSGCISAVAEIIDTGGVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISVNGSDNGKASALELLRLLGDVRYEEESVKPRFDTQDTNDHPQEKKSSKTSEFLKKLSPFLKSKR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0088 750 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Prci5g0088 750 Gene3D - 435 722 IPR011989 -
Prci5g0088 750 SMART arm_5 666 706 IPR000225 GO:0005515
Prci5g0088 750 SMART arm_5 543 583 IPR000225 GO:0005515
Prci5g0088 750 SMART arm_5 584 622 IPR000225 GO:0005515
Prci5g0088 750 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Prci5g0088 750 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Prci5g0088 750 SUPERFAMILY RING/U-box 262 347 - -
Prci5g0088 750 SUPERFAMILY ARM repeat 528 704 IPR016024 -
Prci5g0088 750 MobiDBLite consensus disorder prediction 713 750 - -
Prci5g0088 750 Pfam Kinesin-associated protein (KAP) 491 645 - -
Prci5g0088 750 CDD RING-Ubox_PUB 274 326 IPR045210 -
Prci5g0088 750 PANTHER U BOX DOMAIN-CONTAINING 23 711 - -
Prci5g0088 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 347 IPR013083 -
Prci5g0088 750 MobiDBLite consensus disorder prediction 713 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0088 Prci-Chr5 1612172 1617672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0088 1 723 U-box Gene Family AT4G36550 36.205 2.26e-126 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0088 - - psat:127120233 868.226