Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0083 ATGTCATTGAAATGCTTAGTTCGTGAACTTAAGGAAATGAGAGATGGAATGAGCAACATGCCAAGGCGAGGTGCAGAATGTGCGCAATGGCATAGTCGAAAAGCAAAGTCACACATTGTTCCAGATGTCACCCTACCTCCAGTTGATCCTATTCAACAAGGGCAGTGGGCGAATCTACCTCCAGAACTGCTTTTGGACATTATTCGGAGGGTCGAAGGGAGTGAGACAACATGGCCTGCACGGGCTGTCGTCGTTTCCTGTTCTTCAGTATGTAAATCATGGAGAGCCATTACAAAGGAAATTGTCAAGACTCCTGAGCAATGTGGAAGGCTCACATTTCCTGTCTCAGTGAAACAGCCGGGTCCTCGTGATGCACCAATTCAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATTCTTCTTGTATTTTGGTCTAGTGCCATCGGAAAATGAGAGAGCCAAGTTGTTATTAGCTGCAAAAAAGATAAGAAAACCAACAGCCACAGAGTTTGTTATATCCTTTGTTGCAGATGATTTTTCTCGGGCCAGCAGCACATACCTTGGTAAACTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATATGATAGCCAACCTCCATACAAAGCTAGCATTCAAGCGAATAATCATTCCAGTAGTAAATTCCACCCAAAGCAGGCATCTTCCAGAGTACCCACACGTAAATATAATGTTGCCGCCATTAGTTATGAACTAAATGTTCTTCGCACAAGAGGTCCGAGAAGAATGCACTGCATTTTGAGCTCCATACCTATCTCAGCTATTCAGGAAGGTGGCAGTGCCCCAACTCCAACAACTCTTACGCAATTTTCTTCCTCGCCAGCACTGAAAGGAAAAGATTCAACTACAGATTTAAACTCTGCAAACTTGTTAGATCCACTGGCATCAAGTCAGGGCTCGGTCGAGCCTCTCGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAACTGCAGTGCTGGTGCCTAAATTTCAAGGGCCGTGTCACGGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCCTCTCATGACGTTCCGGCTGCAGAACAAGAGAAGGTGATCTTGCAGTTTGGGAAGATTGGGAAAGACATTTTCACCATGGACTACCGATATCCTCTCTCAGCTTTTCAAGCCTTTGCCATATGCTTGAGCAGCTTCGATACTAAACCGGCTTGTGAATGA 1233 0.4517 MSLKCLVRELKEMRDGMSNMPRRGAECAQWHSRKAKSHIVPDVTLPPVDPIQQGQWANLPPELLLDIIRRVEGSETTWPARAVVVSCSSVCKSWRAITKEIVKTPEQCGRLTFPVSVKQPGPRDAPIQCFIRRNRETSTFFLYFGLVPSENERAKLLLAAKKIRKPTATEFVISFVADDFSRASSTYLGKLRSNFLGTKFAIYDSQPPYKASIQANNHSSSKFHPKQASSRVPTRKYNVAAISYELNVLRTRGPRRMHCILSSIPISAIQEGGSAPTPTTLTQFSSSPALKGKDSTTDLNSANLLDPLASSQGSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHDVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0083 410 CDD F-box_AtTLP-like 56 100 - -
Prci5g0083 410 Gene3D - 50 103 - -
Prci5g0083 410 SUPERFAMILY Tubby C-terminal domain-like 105 410 IPR025659 -
Prci5g0083 410 Pfam F-box domain 56 103 IPR001810 GO:0005515
Prci5g0083 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Prci5g0083 410 Gene3D Tubby Protein; Chain A 113 410 IPR025659 -
Prci5g0083 410 Pfam Tub family 117 405 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Prci5g0083 410 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Prci5g0083 410 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Prci5g0083 410 PANTHER TUBBY-RELATED 25 408 - -
Prci5g0083 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0083 Prci-Chr5 1605320 1608491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0083 1 410 TUB Transcription Factor Family AT2G18280 63.285 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci5g0083 Tub 3e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0083 K19600 - gmx:100798958 620.157