Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0043 ATGGGCATGGCGGCGTTGCAGTTGCAGTTACAGTTGTTTCCCTCTTTGCTTAGAGGTGGTGAATCAATGGCGGGTTTATTCTCACTAGGCTGCGGAGGTGGAGGAAGCGACCGGCAGCAAGAAGAGCAAGAGCATCCCAACCCAACCACGGAATTCCTTCCGCCCGAGACCCTATACTGGTACAAGAACGAAGATGTGTCGTCGTACAGAGGATTTGAGCTGTGGAACCAGCAGCCGGAGCAGTTCATGCCTGGAACACGACCGTCGGAACAAGATGTGTACGGGGGGAGTAGGAGCTACGATGATCCGTCGTCGTCGTCGTCGATGAGAGGTCGGGGAGGAATAAACTGCCAAGACTGCGGGAACAAAGCCAAGAAGGATTGCCCGCACATGAGGTGCAGGACTTGCTGTAAAAGCAGAGGCTTCCATTGCCAAACCCACATCAAAAGCACCTGGGTCCCTGCTCCCAAGCGTCGCGAGCGACAACACCACCTTTCAGCTCTGCAGCAACACCAACGACATGGCCAAACAGATGTGCTAGAGCACCAGGATTTTCCTACAGTAGTAAGCTCGCCTGCGGATTTCCGATGCGTGCGGGTGAACTCCATTGACGACGATGACGAACAATATGCGTACCAAACAGCTGTGAATATAGGAGGGCGTGTGTTCAAAGGAATTCTGTACGACCAAGGTCCTGAATGTAATTACAATGCTGGAGATATGAGCGCCTCAGCCGGCGTAGGCGGCGTTCAACCTTTGAACCTCATTGCCGGTGCCGCCAGCGGCGCGTCTGTTTTACCCGCGACGACAATAAGTGGTGGTGCCATGGTTTCGTCTGGTGGGGCACTTGGGGATCCTTCTTTATATCCAGCTCAACTGAACACCTTCATAGCTGGAGGTAGTGGTACGCAATTCTTCCCTCCCTCGAGGTCTTCATAA 939 0.5367 MGMAALQLQLQLFPSLLRGGESMAGLFSLGCGGGGSDRQQEEQEHPNPTTEFLPPETLYWYKNEDVSSYRGFELWNQQPEQFMPGTRPSEQDVYGGSRSYDDPSSSSSMRGRGGINCQDCGNKAKKDCPHMRCRTCCKSRGFHCQTHIKSTWVPAPKRRERQHHLSALQQHQRHGQTDVLEHQDFPTVVSSPADFRCVRVNSIDDDDEQYAYQTAVNIGGRVFKGILYDQGPECNYNAGDMSASAGVGGVQPLNLIAGAASGASVLPATTISGGAMVSSGGALGDPSLYPAQLNTFIAGGSGTQFFPPSRSS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0043 312 Pfam Domain of unknown function (DUF702) 114 177 - -
Prci5g0043 312 Pfam Domain of unknown function (DUF702) 181 233 - -
Prci5g0043 312 MobiDBLite consensus disorder prediction 80 112 - -
Prci5g0043 312 MobiDBLite consensus disorder prediction 28 54 - -
Prci5g0043 312 NCBIfam LRP1 C-terminal domain 185 232 IPR006511 -
Prci5g0043 312 NCBIfam putative zinc finger domain, LRP1 type 116 158 IPR006510 -
Prci5g0043 312 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 23 294 IPR007818 GO:0003700|GO:0006355
Prci5g0043 312 MobiDBLite consensus disorder prediction 98 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0043 Prci-Chr5 1275165 1277391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0043 23 311 C2H2 Transcription Factor Family AT1G75520 40.220 1.73e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Prci5g0043 DUF702 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0043 - - pcin:129311615 598.201