Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0038 ATGTGTTTGGGAAGAAGGAAGACAGAGCAGATAAACATGGGTCGCGGAAAGATTGAGATCAAGTTGATCGAGAATGCCACGAACAGGCAGGTCACCTACTCCAAACGGCGCAATGGCATTTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCCCTCGTCATGTTCTCCAAAAACAATAAGATGCATGAGTACACTACTCCTGGCTTTACAACAAAAAATATAATAGATCAGTACCAGAGGACCTTGGGGAATATCGATCTCTGGAATGCCCAATATGAGAGGATGCTCGAAAACATGAAGAAGCTGAAAGAGGTTAACAATAAACTCAGAAGACAGATAAGGCAGCGGATGGGTGATGATTTGAATGATCTGGACTTCCAACAACTACGCAATCTTGAGGAGGACATGGTTTCTGCCTCGGCGATCATACGCGAACGAAAGCTTCATGTGATCAAAACTCGCACCACTACCAGTAAGAAAAAGGTGAGAAGCATGGAGCAGATGAACGAGAATCTGCTGCTTGAACTTGAAAGGTGTGTGATCCATTCACAATATCTGGTGCACGAGGAAGGAGATCAGGAATCAGCAGTTACAGTGGCCACTGGCGCCTCCAACTTTCATGGACTGGGCCACCAGCTGCCTGCCCACATGAATCTTCACCATCATGGAATGGGGTTGAGATCAGAGGATCTGCGCCTCGCTTAA 720 0.4625 MCLGRRKTEQINMGRGKIEIKLIENATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLVMFSKNNKMHEYTTPGFTTKNIIDQYQRTLGNIDLWNAQYERMLENMKKLKEVNNKLRRQIRQRMGDDLNDLDFQQLRNLEEDMVSASAIIRERKLHVIKTRTTTSKKKVRSMEQMNENLLLELERCVIHSQYLVHEEGDQESAVTVATGASNFHGLGHQLPAHMNLHHHGMGLRSEDLRLA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0038 239 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 CDD MADS_MEF2_like 14 89 IPR033896 GO:0000977|GO:0045944
Prci5g0038 239 SUPERFAMILY SRF-like 14 108 IPR036879 GO:0003677|GO:0046983
Prci5g0038 239 Coils Coil 90 117 - -
Prci5g0038 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 175 - -
Prci5g0038 239 Gene3D - 25 92 IPR036879 GO:0003677|GO:0046983
Prci5g0038 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 Pfam K-box region 95 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci5g0038 239 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Prci5g0038 239 ProSiteProfiles K-box domain profile. 97 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0038 Prci-Chr5 1156464 1158362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0038 13 227 MADS-box Gene Family AT3G54340 50.000 5.85e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci5g0038 K-box 1.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0038 K09264 - gmx:100784496 300.827