Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0036 ATGGACTGCCGAGCTGCTTTCAAAACCAGTTCTCGCAAGGACGCCACTGTCAAATTCAGCCCCCACGCGTTTCTTGAGGACCTGTCCGCTTTCAATGTGTCCACTCTCACCCCTTCGGACGACTTCTTTGTGGACGACCTTCTCGACTTCTCCCACCTAGATGCCCTCCCCGAACAACAGGAACAGCCTCTCTCTCTTTCTCCTCCCCCACTGCCCCAAACTCCTCTCACTTTTTCTGTCACAGACGGCTTCGCCTCTGCCGAACTCATCCTTCCGGCCGATGACGAGGCAGACTTGGAGTGGTTGTCTCATTTCGTCGACGACTCCTTTCTGGAATACTCCTCCGCCTGCCCTGCCGGAACCTCGACGGCAATTCCCGTGACCAAGACGGACAAAGTACTTGAATCCGAAACCCCTGCTGTAACCTCGCCCTGCTTCCTCACCCCGATTCCTGCCAAGGCCAGAAGCAAACGAAAACGAACCGGTGTTCAGGTTTGGTCGCTGGGCTTTCCTCCCGTGGCCGAGCCATCATCCTCCACCTCCTCCTCGTCATCCTCCTCCTCGTCTCCTTCCAGCACGTGGCTAATTTATAACAACGGTGCCCCTAATCCGCAGCTCGTCGCCTCCGAGGCGAAGAAACCGAAGAAAAGAACGGCTGATGAGGCGGCTCCGGCGTCGCGGAGGTGCAGCCATTGCGGCGTGCAGAAGACTCCGCAGTGGCGGACGGGGCCGCTGGGAGCAAAAACGCTGTGCAACGCGTGCGGGGTCCGATATAAATCGGGTCGTCTCTTACCTGAATACAGACCCGCGTGCAGCCCGACGTTCTCCAGCGAATTGCACTCGAATCACCACCGTAAAGTGCTGGAGATGCGACGGAAGAAGGAGATGAGTGAGACGGGGTCTGGTTTGGAGGCTCCGCCTGCTGTCCCTTAG 933 0.5798 MDCRAAFKTSSRKDATVKFSPHAFLEDLSAFNVSTLTPSDDFFVDDLLDFSHLDALPEQQEQPLSLSPPPLPQTPLTFSVTDGFASAELILPADDEADLEWLSHFVDDSFLEYSSACPAGTSTAIPVTKTDKVLESETPAVTSPCFLTPIPAKARSKRKRTGVQVWSLGFPPVAEPSSSTSSSSSSSSSPSSTWLIYNNGAPNPQLVASEAKKPKKRTADEAAPASRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEMSETGSGLEAPPAVP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0036 310 PANTHER GATA TRANSCRIPTION FACTOR 32 301 - -
Prci5g0036 310 CDD ZnF_GATA 228 276 IPR000679 GO:0006355|GO:0043565
Prci5g0036 310 MobiDBLite consensus disorder prediction 210 224 - -
Prci5g0036 310 FunFam GATA transcription factor 219 303 - -
Prci5g0036 310 Gene3D - 219 298 IPR013088 GO:0006355|GO:0008270
Prci5g0036 310 Pfam GATA zinc finger 229 263 IPR000679 GO:0006355|GO:0043565
Prci5g0036 310 MobiDBLite consensus disorder prediction 173 227 - -
Prci5g0036 310 PIRSF Txn_fac_GATA_plant 15 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Prci5g0036 310 ProSiteProfiles GATA-type zinc finger domain profile. 223 259 IPR000679 GO:0006355|GO:0043565
Prci5g0036 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 285 - -
Prci5g0036 310 ProSitePatterns GATA-type zinc finger domain. 229 254 IPR000679 GO:0006355|GO:0043565
Prci5g0036 310 MobiDBLite consensus disorder prediction 173 205 - -
Prci5g0036 310 SMART GATA_3 223 277 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0036 Prci-Chr5 1075372 1076676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0036 4 310 C2C2-Gata Transcription Factor Family AT5G66320 47.647 1.21e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci5g0036 GATA 4.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0036 - - tcc:18610821 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0200 10 1352484 1354601 Prci5g0036 5 1075372 1076676 CCT
Prci5g0036 5 1075372 1076676 Prci10g0200 10 1352484 1354601 ECH
Prci5g0036 5 1075372 1076676 Prci5g0036 5 1075372 1076676 ECH