Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0030 ATGAGAACGCTTTGTGACGCTTGCGAGAGCGCCGCCGCCATCGTTTTCTGCGCCGCTGATGAGGCTGCCCTCTGCCGTGCCTGTGACCACAAGGTTCATATGTGTAATAAGCTGGCCGGCCGGCATGTAAGGGTTGGTCTGGCGAGTCCTAGCGATGTCCCTCGCTGTGACATTTGTGAAAATGCACCTGCGTTCTTCTACTGCGAGACAGATGGAAGTTCACTTTGCTTGCAGTGTGACATGATGGTTCATGTTGGGGGTAAAAGAACGCATGGAAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCGGGAGATAAAACTGGTCTTCCAGAAAACTCAGTTTCACTGCCTCTGGAACCTGGTGGGGCTAAAAGAGGACAAAATCCTCTGCCTAAAATAAATGTGGGAGAGGGACAACAAAATCATAGGTTAGCTCTGGTTGCAGCACCTGAACATGATGCTGACGGTCATGCCATGATGGGAACTAACATGATTGATTTGAACATGAAGCCTCAGAAAATACATGAACAAGCTGCCAATAATCAGCCATAA 555 0.4829 MRTLCDACESAAAIVFCAADEAALCRACDHKVHMCNKLAGRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKTGLPENSVSLPLEPGGAKRGQNPLPKINVGEGQQNHRLALVAAPEHDADGHAMMGTNMIDLNMKPQKIHEQAANNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0030 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Prci5g0030 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 122 - -
Prci5g0030 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Prci5g0030 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Prci5g0030 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Prci5g0030 184 FunFam B-box zinc finger protein 19 2 92 - -
Prci5g0030 184 CDD Bbox1_BBX-like 56 96 - -
Prci5g0030 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Prci5g0030 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Prci5g0030 184 CDD Bbox1_BBX-like 4 47 - -
Prci5g0030 184 Gene3D Classic Zinc Finger 2 91 - -
Prci5g0030 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Prci5g0030 184 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0030 Prci-Chr5 898830 901454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0030 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 59.563 5.01e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Prci5g0030 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0030 - - pcin:129311612 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0194 10 1274601 1277850 Prci5g0030 5 898830 901454 CCT
Prci5g0030 5 898830 901454 Prci10g0194 10 1274601 1277850 ECH
Prci5g0030 5 898830 901454 Prci5g0030 5 898830 901454 ECH
Prci14g0188 14 1586343 1588294 Prci5g0030 5 898830 901454 ECH