Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0020 ATGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGTTTCCACCCAACCGATGAAGAGCTTGTTGGCTATTATCTGAAGAAAAAAGTTGCTTATCAGAAGATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGCATAGAACCGTGGGATCTTCAAGAGAGATGTTGGATCGGGTACGAGGAGCAGAAGGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGGACGAGGACAAACAGAGCTACCATGGCAGGATTCTGGAAGGCGACAGGAAGAGACAAGGCGGTGTACGACAAGAGAAAGCTCATAGGTATGAGGAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCGAACGGGCTTAAAACTGACTGGATCATGCACGAATATAGGCTCGAATCTGATGAGAACGGACCTCCACAGGAGGAAGGATGGGTTGTATGCAGAGCTTTCAAGAAAAAAAAGAACGGCCAAACGAAGGCCATAGGTGGATGGGATTCAAGCCAATTCTTGGAGGAAACAAGTGGAGTGACCACAGTCGGGAATCCGGTTGACATTATCGCAAGGCAGCCTCATCATCAGAGTCATAACATAGCATTAAACAATTACATGTGCAAGCAAGAGATAGAAGTGGACAACTTGAGCACTTTGATTCGCTCATCAGACCCATTCATACAGCTTCCTCAGCTAGAAAGCCCGTCTCTTCTATTGACAAAGAGGCCCAGCTCGTCAGTGTCTTTGATATCAGAAAACAAAAACAACAATAATAACGACGAGGATGACCAAAGCGGATCAGCATTGCCCAGAAAGAAAGTGACTACTGATTGGAGGGCTCTCGACAAGTTTGTGGCTTCCCAATTAAGCCAGGAAGACAGCTTTGGAACGCCTAATAACAGCTCGAACATTTCGTCGTTTCTGTTGTTGCAGAATACTGCTAGTAGAGATGAAGCAGATGAAGGTAACAGGTTAAGCTTAAACCCATTTTTTAACACCAGAACCTCATCAGACTGTGATATTGGGATATGCGTATTTGACAAATAA 1056 0.4517 MMESMESCVPPGFRFHPTDEELVGYYLKKKVAYQKIDLDVIREIDLYRIEPWDLQERCWIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKRKLIGMRKTLVFYKGRAPNGLKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKKNGQTKAIGGWDSSQFLEETSGVTTVGNPVDIIARQPHHQSHNIALNNYMCKQEIEVDNLSTLIRSSDPFIQLPQLESPSLLLTKRPSSSVSLISENKNNNNNDEDDQSGSALPRKKVTTDWRALDKFVASQLSQEDSFGTPNNSSNISSFLLLQNTASRDEADEGNRLSLNPFFNTRTSSDCDIGICVFDK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0020 351 MobiDBLite consensus disorder prediction 251 275 - -
Prci5g0020 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 267 - -
Prci5g0020 351 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Prci5g0020 351 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Prci5g0020 351 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Prci5g0020 351 MobiDBLite consensus disorder prediction 251 267 - -
Prci5g0020 351 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Prci5g0020 351 FunFam NAC domain-containing protein 18 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0020 Prci-Chr5 671967 676472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0020 2 350 NAC Transcription Factor Family AT2G18060 60.950 5.46e-150 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci5g0020 NAM 5.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0020 - - pvu:PHAVU_002G110900g 499.975