Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0018 ATGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGTTTCCACCCAACCGATGAAGAGCTTGTTGGCTATTATCTGAAGAAAAAAGTTGCTTATCAGAAGATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGCATAGAACCGTGGGATCTTCAAGAGAGATGTTGGATCGGGTACGAGGAGCAGAAGGAGTGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGGACGAGGACAAACAGAGCTACCATGGCAGGATTCTGGAAGGCGACAGGAAGAGACAAGGCGGTGTACGACAAGAGAAAGCTCATAGGTATGAGGAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCGAACGGGCTTAAAACTGACTGGATCATGCACGAATATAGGCTCGAATCTGATGAGAACGGACCTCCACAGGAGGAAGGATGGGTTGTATGCAGAGCTTTCAAGAAAAAAAAGAACGGCCAAACGAAGGCCATAGGTGGATGGGATTCAAGCCAATTCTTGGAGGAAACAAGTGGAGTGACCACAGTCGGGAATCCGGTTGACATTATCGCAAGGCAGCCTCATCATCAGAGTCATAACATAGCATTAAACAATTACATGTGCAAGCAAGAGATAGAAGTGGACAACTTGAGCACTTTGATTCGCTCATCAGACCCATTCATACAGCTTCCTCAGCTAGAAAGCCCGTCTCTTCTATTGACAAAGAGGCCCAGCTCGTCAGTGTCTTTGATATCAGAAAACAAAAACAACAATAATAACGACGAGGATGACCAAAGCGGATCAGCATTGCCCAGAAAGAAAGTGACTACTGATTGGAGGGCTCTCGACAAGTTTGTGGCTTCCCAATTAAGCCAGGAAGACAGCTTTGGAACGCCTAATAACAGCTCGAACATTTCGTCGTTTCTGTTGTTGCAGAATACTGCTAGTAGAGATGAAGCAGATGAAGATTAA 978 0.4581 MMESMESCVPPGFRFHPTDEELVGYYLKKKVAYQKIDLDVIREIDLYRIEPWDLQERCWIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKRKLIGMRKTLVFYKGRAPNGLKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKKNGQTKAIGGWDSSQFLEETSGVTTVGNPVDIIARQPHHQSHNIALNNYMCKQEIEVDNLSTLIRSSDPFIQLPQLESPSLLLTKRPSSSVSLISENKNNNNNDEDDQSGSALPRKKVTTDWRALDKFVASQLSQEDSFGTPNNSSNISSFLLLQNTASRDEADED 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0018 325 MobiDBLite consensus disorder prediction 251 275 - -
Prci5g0018 325 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Prci5g0018 325 FunFam NAC domain-containing protein 18 162 - -
Prci5g0018 325 MobiDBLite consensus disorder prediction 251 267 - -
Prci5g0018 325 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Prci5g0018 325 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Prci5g0018 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 258 - -
Prci5g0018 325 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0018 Prci-Chr5 671629 676025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0018 2 300 NAC Transcription Factor Family AT2G18060 66.772 1.14e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci5g0018 NAM 4.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0018 - - pvu:PHAVU_002G110900g 471.085