Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci5g0016 ATGAGGCGAGCAAGAAAATCGTCCAGCAGGGTTTCATGGGCTACCGGAGGGAATCTCTGTCAGGTAAAATTGTTTGTATCTGAGGGTTGCCCTTCAAAAGTTGGCCAGAAATCTCAAGATCAACTTCAAGCAAAGGTGTCATCAATGCTAAATTCAAGTACTATTGAATTTAATAATTTACCCCCTGGGTTTGAATGCAATCCACTTCCAAACCAATCAAAGTATGAACTCTCTTGCATTCCTCAGATTAATTGGAGATGCCCTCCTCCGTTTGTTATCAGTCGTAATTGGCATGTTGTGGCTGGTGAAGAAAGTATGGAGAAAGAAGATAAAAAACTTAGAGAGCTCAGGGTGCTTGAAGCAGTTTATCCTCGTCTCTCTGCCATTCCTCCGAGCCCTTTTGTTGCTTTGGATGTAGAAGAGGAAGATTACGATGATAAACTCACTCCTCCGGTCCCCATCATTCCCATTGAGGAAGGGCAGTCTGTGGATGATAAACCCGAATTGGCAGCATGCAGAGACGCTTCTGCCACTGTACAGTCACAAAACTTGCACCACTATATGTCAGTTATCACGGAACCAATTCAATGTAATACCTCTTCTCTTGCCTTAACCGTCTGCGGAAATCCCACACCTGGTTTGGAAGTAGATTTAGTTGCTGCCTCTGCTGTTGTGAATGCCATTATGAAGAGTAGTGGGCAAGGAAGCTTGATTGATATGGATCTACTCGTTAAAATATTTAATGACCCGTTAATGATTGAGAAATTAGCTAATGATCATAGAACTGCTGCCACAACTGCAAGTGCATCCTCTAATACAATGGTAATGCCCGCTTCTGGATCGAAGCTAGCAGTACCTTCAGTTCCATCGTCGACACCCACACTTGGTGAGCTAACTCATTGGCTTACACCCACAATCACTACGGGTTTGTTATCTTGTTCAGGGTTGAAGCCTGAAATTTCGCCAGCCATTCCTGAGAAGCTGGCAATTCCATCAATTCCAATGTCAATGCCTGGTAAACCTGCAATTCCCTCTGTTCCTGTGCAGACTCCTGTACCTGATATGCGGAGGCATGTGAACAAAAATTGTCACCGTATGTCAAATGGAGTTCTACCATTTTTAGATGCCCAACCTCCTCAACAAGAAGCTTTTCTGGCAACTGGGGCGATGCATGCAACATCTTTGGCTTCCATTCTAGCGATTTCTTCTAGTGGGAACGTGCAACATTCAATGACAAGCCAGCTGCGATCTACTGCCAGGGCAATGCCTCACCAATTAAGTTCAGGTTCAGCATTTGCTGCCAAGGAAGCGCATTCTGTCAAGGATGCCAACTATTTAAAGAACTTGATTAGGCAACACGGTTCAGATAAGCAAGACACACAGGACTCACGTATAGGTATCCGGCACAGTAACTTCCAAAATATGAAAACGGTACATAACGACAAACACGGAGAAGTTAAACACACATTCCAGAAAACTTGCTTATACTTTAACAGCTCAAGGGGGTGTCGAAATGGTTCTAGCTGCCCCTATCAGCATGATATGTCAGTTCAATGGGGAGCTGGCGACGCTCTAGGGGGTTCAAATTCAAAAAGATTGAAACTAGAACCTGAAATTAAGGGAAGAATATAA 1632 0.4393 MRRARKSSSRVSWATGGNLCQVKLFVSEGCPSKVGQKSQDQLQAKVSSMLNSSTIEFNNLPPGFECNPLPNQSKYELSCIPQINWRCPPPFVISRNWHVVAGEESMEKEDKKLRELRVLEAVYPRLSAIPPSPFVALDVEEEDYDDKLTPPVPIIPIEEGQSVDDKPELAACRDASATVQSQNLHHYMSVITEPIQCNTSSLALTVCGNPTPGLEVDLVAASAVVNAIMKSSGQGSLIDMDLLVKIFNDPLMIEKLANDHRTAATTASASSNTMVMPASGSKLAVPSVPSSTPTLGELTHWLTPTITTGLLSCSGLKPEISPAIPEKLAIPSIPMSMPGKPAIPSVPVQTPVPDMRRHVNKNCHRMSNGVLPFLDAQPPQQEAFLATGAMHATSLASILAISSSGNVQHSMTSQLRSTARAMPHQLSSGSAFAAKEAHSVKDANYLKNLIRQHGSDKQDTQDSRIGIRHSNFQNMKTVHNDKHGEVKHTFQKTCLYFNSSRGCRNGSSCPYQHDMSVQWGAGDALGGSNSKRLKLEPEIKGRI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci5g0016 543 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 3 536 - -
Prci5g0016 543 ProSiteProfiles Zinc finger C3H1-type profile. 489 516 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci5g0016 Prci-Chr5 523581 530139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci5g0016 82 153 Homeobox Transcription Factor Family AT4G02560 40.278 6.34e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci5g0016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci5g0016 - - gmx:102661587 518.85