Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci590g0001 ATGCATAATAAGGACGCTTGCTCTTCTTCGAATGGCGGAGTCGGTACCAACATTACTACTTCTGGTCAAGTGCAGTCGAGTGGCGCCATTTATGGTGCCATCTACTCCTCTCTGTTTTCTGACAAGCCGTCCTTCTCAGCAACGGACAATGGCGACCTCTCGGCTTACCCGTATGAAGGAAACTCTCCCATGAAGTATAATGACTCACCGATTCAGAGTCACCTGTACGACTCCTGCGTCATACAGAATCATCAAGATATGGTGAACCGCCATAGCATGTGCCTAAATCGCCTTGCCGAAACCTCAAAGGAGGTCGAGGCTCTGCGGCAGGAGAACAGCCAACTTCGGGCTGTGAACATGGAGCTGAACAGCCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCTTACGGAAGCCTTTGACGTCATAAATGGGTTTCGTGGCTTACGTGTTGCGGACAATTTCGGTGATGGGAAGGAGAACTGTGAAAATTGGACTAAGGATCAAGAGGTTTCGAACGAGAGCCCAACAAGCGTGATTGAGAACAATGGCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGCATATCCGTGAGGTCAAACGGGTACTTGAAGGTTGCTCAGGCTTCGACCGGCTCCAGCAATGGAACTCGCACCAAGGGCGCTGCTCGGCCACGCCCATCTTTGACCCCAACCGATGTCGTTCAAAAGGTGTATGTACGTGGAGGGAAGAAAGAGGAAGAGCCTCTGGAGATGGTGGTGTATAACCAAGGTATGTTCAAGACGGAGCTGTGCAACAAATGGCAGGAGACGGGGACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGTATTGGTGAGCTCCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGCGTTGTATGCCCATACGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCCATAGCACATGCACACCCTAATAAGCCCCGGCCGATGAGCCTGCACAGATGA 1062 0.5179 MHNKDACSSSNGGVGTNITTSGQVQSSGAIYGAIYSSLFSDKPSFSATDNGDLSAYPYEGNSPMKYNDSPIQSHLYDSCVIQNHQDMVNRHSMCLNRLAETSKEVEALRQENSQLRAVNMELNSQLSLLIQVSVQNQLDGSSGLTEAFDVINGFRGLRVADNFGDGKENCENWTKDQEVSNESPTSVIENNGEVERFSLPKSISVRSNGYLKVAQASTGSSNGTRTKGAARPRPSLTPTDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAHAHPNKPRPMSLHR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci590g0001 353 SUPERFAMILY CCCH zinc finger 263 298 IPR036855 GO:0046872
Prci590g0001 353 FunFam zinc finger CCCH domain-containing protein 15-like 260 299 - -
Prci590g0001 353 Coils Coil 98 125 - -
Prci590g0001 353 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Prci590g0001 353 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Prci590g0001 353 MobiDBLite consensus disorder prediction 215 236 - -
Prci590g0001 353 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Prci590g0001 353 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Prci590g0001 353 FunFam Zinc finger protein 36, C3H1 type-like 1 300 336 - -
Prci590g0001 353 Gene3D - 261 299 - -
Prci590g0001 353 Gene3D - 300 336 - -
Prci590g0001 353 SUPERFAMILY CCCH zinc finger 300 334 IPR036855 GO:0046872
Prci590g0001 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Prci590g0001 353 PANTHER CCCH ZINC FINGER/TIS11-RELATED 84 338 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci590g0001 74 339 C3H Transcription Factor Family AT1G68200 53.506 1.73e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci590g0001 zf-CCCH 4.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci590g0001 K18753 - gmx:100819250 421.394