Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci588g0002 ATGGGAGGAGAGATTTTGCGTAAAGGGCCTTGGCTCCAAGAGGAAGACGAGCAACTCACTACCTTTGTTACTTGTCTCGGAGAACGAAGATGGGATTCCCTTGCCAAAGTTGCTGGGCTCAGGAGAAGTGGTAGGAGTTGCAGGTTGAGGTGGATGAACTATCTTCGTCCAAATCTGAAGCACGGCCCTTTTAGTTTTGAAGAAGAGAACCTTATTATTCAGCTTCACCAGCAATGGGGCAACAAGTGGTCAAAGATTGCTCGCAGTTTACCCGGAAGAACAGACAATGAAGTCAAGAATTATTGGAGAACTCATTTGAGAAAGAAAGCACGAGTCCAACAAGATGAATTCCAATATAAACCAGCTGACAGCACTGAACAAGGTGCCTTCAGTGATGAGAACACTTATGATATTAATGTTGGCAAGGATTACAGCCAGATGAACCTTGAATGCCAAGAAAATGTTGGGGAGACTCAGGATAATTCCTTTCAGGCTTTTCCAACATCTGAATGGAAAATGACAAATTCACCTTACGAGATTCGGGTATCAGGCTGGATGGCAGAATTGCAAGAAGAACAAAATGGAATAGAATATGGACATCATTGTAATAACACCCAGTCCGATGAATTTTATTCTACATGGTTAGACTCTGAAACATGGGCTTATTCTTATTCAGGTGCATGA 684 0.4254 MGGEILRKGPWLQEEDEQLTTFVTCLGERRWDSLAKVAGLRRSGRSCRLRWMNYLRPNLKHGPFSFEEENLIIQLHQQWGNKWSKIARSLPGRTDNEVKNYWRTHLRKKARVQQDEFQYKPADSTEQGAFSDENTYDINVGKDYSQMNLECQENVGETQDNSFQAFPTSEWKMTNSPYEIRVSGWMAELQEEQNGIEYGHHCNNTQSDEFYSTWLDSETWAYSYSGA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci588g0002 227 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Prci588g0002 227 SMART sant 60 108 IPR001005 -
Prci588g0002 227 SMART sant 7 57 IPR001005 -
Prci588g0002 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Prci588g0002 227 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Prci588g0002 227 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Prci588g0002 227 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 146 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci588g0002 227 FunFam Myb transcription factor 8 60 - -
Prci588g0002 227 CDD SANT 63 106 IPR001005 -
Prci588g0002 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Prci588g0002 227 Gene3D - 62 133 - -
Prci588g0002 227 CDD SANT 10 55 IPR001005 -
Prci588g0002 227 SUPERFAMILY Homeodomain-like 7 102 IPR009057 -
Prci588g0002 227 Gene3D - 8 60 - -
Prci588g0002 227 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci588g0002 7 111 MYB Transcription Factor Family AT5G59780 64.762 1.11e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci588g0002 Myb_DNA-binding 8.4e-11 CL0123