LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci587g0001	ATGGTGCATTCAAGGAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCCCTCTTAAAGAGGAGGGTGTGGCTGGGGACGTTTGAGACGGCGGAAGAAGCGGCGAGAGCGTATGATCAAGCTGCCATTCTGATGAGTGGCCGGAATGCCAAGACCAATTTCCCGATGTCACAGACTCCGGACGGCGATTCCAACAAGGCGGCTGGGGCGGCCAGGGATCTCGAGGAGATCCTGCACGCCAAGTTGAGGAAATGCGGGAAGCTGCCGTCGCCGTCCATGACGTGCCTGAGGCTGGACACCGAGAACTCCAACATCGGAGTGTGGCAGAAACGCGCCGGCCAGCGTACCGATAACTCCAATTGGGTGATGACGGTCGAGCTGGGGAAGAAGGCCGGAAGTGATAATCATAATAATATCAATAACAGCAACGGTAATGGAGTGGAGAAAACGACGACGTCGTCGTGGAAGTGCTCTGAGTCTGCAATCTCATCGGGAGGGCCGGAAGTGACGATGGGAGGTGGAGGGTTGAACGAAGAAGAAAGAATTGCACTGCAAATGATTGAGGAACTGCTCAACAGAAACTGTCCAAGTCCTCCGGCACCTTCATTTGATCATCATGGTCTGGTTGAAGAAGACAACCATGCTCATGGCGAAAGCTTTCTCTTTTGA	693	0.5411	MVHSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPMSQTPDGDSNKAAGAARDLEEILHAKLRKCGKLPSPSMTCLRLDTENSNIGVWQKRAGQRTDNSNWVMTVELGKKAGSDNHNNINNSNGNGVEKTTTSSWKCSESAISSGGPEVTMGGGGLNEEERIALQMIEELLNRNCPSPPAPSFDHHGLVEEDNHAHGESFLF	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci587g0001	230	Gene3D	AP2/ERF domain	5	65	IPR036955	GO:0003700\|GO:0006355
	Prci587g0001	230	MobiDBLite	consensus disorder prediction	140	159	-	-
	Prci587g0001	230	FunFam	Ethylene-responsive transcription factor 2	5	64	-	-
	Prci587g0001	230	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	5	153	-	-
	Prci587g0001	230	CDD	AP2	6	65	IPR001471	GO:0003700\|GO:0006355
	Prci587g0001	230	SUPERFAMILY	DNA-binding domain	6	65	IPR016177	GO:0003677
	Prci587g0001	230	PRINTS	Ethylene responsive element binding protein signature	7	18	IPR001471	GO:0003700\|GO:0006355
	Prci587g0001	230	PRINTS	Ethylene responsive element binding protein signature	29	45	IPR001471	GO:0003700\|GO:0006355
	Prci587g0001	230	SMART	rav1_2	6	69	IPR001471	GO:0003700\|GO:0006355
	Prci587g0001	230	ProSiteProfiles	AP2/ERF domain profile.	6	63	IPR001471	GO:0003700\|GO:0006355
	Prci587g0001	230	Pfam	AP2 domain	6	54	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci587g0001	1	202	AP2-EREBP Transcription Factor Family	AT1G15360	57.604	7.21e-74	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Prci587g0001		AP2	1.2e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci587g0001	-		-	adu:107472039	277.33