Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci585g0004 ATGTTGCAGACTTATGATCGGCCATTTATCCAAAGATGGTTAAATGAAGGCCACAGGACATGCCCTCAAACACAGCAAGTCCTTTCTCACTCCATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCGAAGAGAACGGAGTTGAATTGCCTAAGCTTGTCCAGGACATTGATGAAGTAATAACTGGTGCAGACAGAAGCCATTTAAATTCATTGCTCAAGAAATTGTCGATGTCTATTTCTGATCAGAAAGCAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATTTCGAATCCTTTTTAACGAGTCCAGCGATGTGATATTACAGTTGCTCAGTCCATTGTCCCCCGGTACGTCTTATATCCCTCCTGACCTTCACGAGGACTTGATCACTACTGTTCTAAATCTCTCCATTCATGATGATAATAAGAAAATGTTTGCTGAGAGTCCTATGGTTATCCCTCTGCTGATTGAGTCCTTAAAATTTGGAACCATCCAAACAAGAAGTAATGCTGCGGCAGCTATTTTCACATTATCAGCACTTGATTCAAACAAGAGCATCATTGGAAACTCGGGGGCCATCAAACATTTAATTGAGCTTTTAGAGGAGGGACATCCACTGGCCTTGAAGGATGCTGCCTCTGCGATATTCAGCCTATGTTTGGTGCATGAAAATAAAGGAAGGACTGTTCGAGAAGGAGCTGTCCCAGTTATCCTGAACAAGATCGTGAACCGTGTTCTAGTTGATGAGTTGTTGGCTATACTGGCGCTCCTGTCTAGCCATCCAAAGGCTGTTGAAGAAATGAGCGATCTTGGTGTTGTCCCCTTGTTGCTCAGTATTATACGGGAGAGCACCTCCGAAAGCTGCAAGGAAAATTGTGTTGCAATCCTATACACAATCTGTCTTACTGATAGAACAAAATGGAAGGAAATAAGAGAAGAAGAAAAGGCCAAGGGCACACTTTCCGAACTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAATGGGATTCTTCAGAGGCTAAATAGATCTCCCACCTTAACACACACGGCTTAG 1086 0.4374 MLQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNHLVRDMISHWCEENGVELPKLVQDIDEVITGADRSHLNSLLKKLSMSISDQKAAAKELRLLTKRMPSFRILFNESSDVILQLLSPLSPGTSYIPPDLHEDLITTVLNLSIHDDNKKMFAESPMVIPLLIESLKFGTIQTRSNAAAAIFTLSALDSNKSIIGNSGAIKHLIELLEEGHPLALKDAASAIFSLCLVHENKGRTVREGAVPVILNKIVNRVLVDELLAILALLSSHPKAVEEMSDLGVVPLLLSIIRESTSESCKENCVAILYTICLTDRTKWKEIREEEKAKGTLSELAQCGTSRAKRKANGILQRLNRSPTLTHTA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci585g0004 361 Pfam U-box domain 3 50 IPR003613 GO:0004842|GO:0016567
Prci585g0004 361 PANTHER U BOX DOMAIN-CONTAINING 3 351 - -
Prci585g0004 361 ProSiteProfiles U-box domain profile. 1 53 IPR003613 GO:0004842|GO:0016567
Prci585g0004 361 FunFam RING-type E3 ubiquitin transferase 256 357 - -
Prci585g0004 361 SMART arm_5 269 310 IPR000225 GO:0005515
Prci585g0004 361 SMART arm_5 147 188 IPR000225 GO:0005515
Prci585g0004 361 SMART arm_5 189 229 IPR000225 GO:0005515
Prci585g0004 361 SUPERFAMILY ARM repeat 75 351 IPR016024 -
Prci585g0004 361 Pfam Armadillo/beta-catenin-like repeat 192 228 IPR000225 GO:0005515
Prci585g0004 361 SUPERFAMILY RING/U-box 3 56 - -
Prci585g0004 361 Gene3D - 71 357 IPR011989 -
Prci585g0004 361 SMART Ubox_2 3 46 IPR003613 GO:0004842|GO:0016567
Prci585g0004 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 53 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci585g0004 42 361 U-box Gene Family AT3G07360 59.878 1.36e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci585g0004 - - gmx:100806619 551.592