Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci585g0003 ATGGCAAAGATAGGCGTCTCTGATTACGACTCGACCCTGTTTCCCCATGCAAAGGCTTTGGATTTGAAACAAAAGTTGCGGGGGCTCGTCAATATTATCCTGGACGCCGAGGATTTCCCGCTGGCCAGACTAGACGAAGCTATCACGACTCTTTCTGCTCTCAAGGATTTGAAATGTAAATCTACCGGCTCCTTCCCTCAGAAATTCGATGATTTGTCTATTCCCCCCGAATTTCGATGCCCCATATCTCAAGAGCTAATGAGTGATCCTGTTATCCTGGCCACCGGACAGACTTATGATCGGCCATTTATCCAAAGATGGTTAAATGAAGGCCACAGGACATGCCCTCAAACACAGCAAGTCCTTTCTCACTCCATCCTTACTCCAAATCATCTGGTCCGTGACATGATTTCACATTGGTGCGAAGAGAACGGAGTTGAATTGCCTAAGCTTGTCCAGGACATTGATGAAGTAATAACTGGTGCAGACAGAAGCCATTTAAATTCATTGCTCAAGAAATTGTCGATGTCTATTTCTGATCAGAAAGCAGCTGCAAAAGAGCTCCGGCTATTAACAAAGCGAATGCCCTCATTTCGAATCCTTTTTAACGAGTCCAGCGATGTGATATTACAGTTGCTCAGTCCATTGTCCCCCGGTACGTCTTATATCCCTCCTGACCTTCACGAGGACTTGATCACTACTGTTCTAAATCTCTCCATTCATGATGATAATAAGAAAATGTTTGCTGAGAGTCCTATGGTTATCCCTCTGCTGATTGAGTCCTTAAAATTTGGAACCATCCAAACAAGAAGTAATGCTGCGGCAGCTATTTTCACATTATCAGCACTTGATTCAAACAAGAGCATCATTGGAAACTCGGGGGCCATCAAACATTTAATTGAGCTTTTAGAGGAGGGACATCCACTGGCCTTGAAGGATGCTGCCTCTGCGATATTCAGCCTATGTTTGGTGCATGAAAATAAAGGAAGGACTGTTCGAGAAGGAGCTGTCCCAGTTATCCTGAACAAGATCGTGAACCGTGTTCTAGTTGATGAGTTGTTGGCTATACTGGCGCTCCTGTCTAGCCATCCAAAGGCTGTTGAAGAAATGAGCGATCTTGGTGTTGTCCCCTTGTTGCTCAGTATTATACGGGAGAGCACCTCCGAAAGCTGCAAGGAAAATTGTGTTGCAATCCTATACACAATCTGTCTTACTGATAGAACAAAATGGAAGGAAATAAGAGAAGAAGAAAAGGCCAAGGGCACACTTTCCGAACTCGCACAATGTGGGACTTCAAGGGCCAAAAGGAAGGCTAATGGGATTCTTCAGAGGCTAAATAGATCTCCCACCTTAACACACACGGCTTAG 1368 0.4474 MAKIGVSDYDSTLFPHAKALDLKQKLRGLVNIILDAEDFPLARLDEAITTLSALKDLKCKSTGSFPQKFDDLSIPPEFRCPISQELMSDPVILATGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNHLVRDMISHWCEENGVELPKLVQDIDEVITGADRSHLNSLLKKLSMSISDQKAAAKELRLLTKRMPSFRILFNESSDVILQLLSPLSPGTSYIPPDLHEDLITTVLNLSIHDDNKKMFAESPMVIPLLIESLKFGTIQTRSNAAAAIFTLSALDSNKSIIGNSGAIKHLIELLEEGHPLALKDAASAIFSLCLVHENKGRTVREGAVPVILNKIVNRVLVDELLAILALLSSHPKAVEEMSDLGVVPLLLSIIRESTSESCKENCVAILYTICLTDRTKWKEIREEEKAKGTLSELAQCGTSRAKRKANGILQRLNRSPTLTHTA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci585g0003 455 Gene3D - 165 452 IPR011989 -
Prci585g0003 455 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Prci585g0003 455 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Prci585g0003 455 Pfam U-box domain 74 144 IPR003613 GO:0004842|GO:0016567
Prci585g0003 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 147 IPR013083 -
Prci585g0003 455 CDD RING-Ubox_PUB 75 127 IPR045210 -
Prci585g0003 455 FunFam RING-type E3 ubiquitin transferase 350 451 - -
Prci585g0003 455 SMART arm_5 241 282 IPR000225 GO:0005515
Prci585g0003 455 SMART arm_5 283 323 IPR000225 GO:0005515
Prci585g0003 455 SMART arm_5 363 404 IPR000225 GO:0005515
Prci585g0003 455 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Prci585g0003 455 SUPERFAMILY ARM repeat 169 445 IPR016024 -
Prci585g0003 455 PANTHER U BOX DOMAIN-CONTAINING 40 445 - -
Prci585g0003 455 Pfam Armadillo/beta-catenin-like repeat 286 322 IPR000225 GO:0005515
Prci585g0003 455 SUPERFAMILY RING/U-box 70 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci585g0003 136 455 U-box Gene Family AT3G07360 59.878 5.03e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci585g0003 - - gmx:100806619 628.632