Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci562g0010 ATGGCTTTAGAGGCTCTCAATTCTCCCACTACTGCTCCAACTTCTTTCACCTACAAGCAAGAGGAAGACGATGATGAGCTTGATCTTCACTGGTCCAAGGGCAAGCGTTCTAAACGACCTCGTTTTGACTCTGCCAACCCTCCTTCTGAAGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCCCACAGCGGCCACAACAAAACAGCCACAGACTCCGCCTCCGCCGCCTCTCCGCCGCGTCCTTCTTCTTCATCATCGCCTCCCAATAATAATCCTATCAAGCTAGCTCATAGGTGTACCGTCTGCAATAAAGTATTCTCTTCTTACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGCAAGTCCTCCTCGGAATCCGCCGCCGCCGCCGACAACGCGTCCACCTCCTCTGGTACCGGCACGGGCAGGATGCACGAGTGTTCCATCTGTCACAAGGTCTTCCCTACTGGTCAGGCCTTGGGTGGGCATAAGAGATGTCACTACGACGGCGGCAACGCGAACAGCAGTAGCGCCGGCGCCGGCGTGTCCTCGTCCGAGGGAGGCGGCGCGTCCACTGTAAGTCTCCGGGGGTTTGACTTGAACCTGCCGGCACCCCTGATGGACTTATCACCGGTGGGACTCGGTTCCGGCGGAGATGATTCCGGGATGAAGAAGAGTGTGGAGCAGGAGGTGGAGAGTCCGTTACCGGTAGCAGCCGGTAATAAGAGAAGTCGTGTGCTTTTTACCAGTGAAATGGACGATGTAAAGCCTTCTTCGCCTGCGTCGTTATAA 795 0.5623 MALEALNSPTTAPTSFTYKQEEDDDELDLHWSKGKRSKRPRFDSANPPSEEEYLALCLIMLAHSGHNKTATDSASAASPPRPSSSSSPPNNNPIKLAHRCTVCNKVFSSYQALGGHKASHRKSSSESAAAADNASTSSGTGTGRMHECSICHKVFPTGQALGGHKRCHYDGGNANSSSAGAGVSSSEGGGASTVSLRGFDLNLPAPLMDLSPVGLGSGGDDSGMKKSVEQEVESPLPVAAGNKRSRVLFTSEMDDVKPSSPASL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci562g0010 264 SMART c2h2final6 98 120 IPR013087 -
Prci562g0010 264 SMART c2h2final6 146 168 IPR013087 -
Prci562g0010 264 MobiDBLite consensus disorder prediction 212 264 - -
Prci562g0010 264 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Prci562g0010 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 168 IPR013087 -
Prci562g0010 264 MobiDBLite consensus disorder prediction 124 142 - -
Prci562g0010 264 SUPERFAMILY beta-beta-alpha zinc fingers 98 168 IPR036236 -
Prci562g0010 264 MobiDBLite consensus disorder prediction 118 142 - -
Prci562g0010 264 MobiDBLite consensus disorder prediction 18 46 - -
Prci562g0010 264 Gene3D Classic Zinc Finger 96 168 - -
Prci562g0010 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 205 IPR044653 GO:0003700
Prci562g0010 264 MobiDBLite consensus disorder prediction 1 48 - -
Prci562g0010 264 Pfam C2H2-type zinc finger 146 170 - -
Prci562g0010 264 Pfam C2H2-type zinc finger 97 122 - -
Prci562g0010 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Prci562g0010 264 MobiDBLite consensus disorder prediction 69 93 - -
Prci562g0010 264 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci562g0010 1 253 C2H2 Transcription Factor Family AT1G27730 41.353 4.59e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci562g0010 zf-C2H2_6 9.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci562g0010 - - ccaj:109817656 228.794