Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci561g0001 ATGGCTGCAAATCTCACTGGCGGGGCGATAATAACAATGTGCAGAGACGATTTCTCTTGCGAGGACCTGAAGCCTGTGCTTCAAGTAATTGACCTGAAGTTGGTGCAGTCGCAGCAGCATAACAACACGGAGAGGTATAGGCTTGTGCTTTCAGACGGTTCCCATTATCAGCAAGGGATGCTCGCTACTCAGAAGAACGAGTTGGTCCATGCTGGGCGGTTGCAGAAGGGCTCTGTTGTTAAGTTGACTCAGTTTATTTGTAATGTTGTACAGAGTCGCAAGATTATTATCATCATTGAGCTGGATATGGTACTTGACAGATGTGATCTGATTGGAGAACCTGTTGCTGCGCCAAGAGCTGCACCTGCATCATCTTCCACTGATCAGTCTGGAGCTAACACAGGAAATCCTCAGTCTTTAACCAGTACTTCACCTGCAGGTGGCAACATTGCTAGACCGAATGTGACTGGGCCATCTCTAGATCATTCACAAATCAATCACAATAACAATGGTGCAAGATATGGTGCTGCAAATGCCCCTCCTTCATTGCCTAAAACAGAGCCTAGAGCTACACCTACTTTACCAAAATCAGGGCCATCAAGTGGGTCCTATGGTGAACATAACATGGGATTTTGCAATCCTCGACCGGAAACTCCAAGACCCCCACAAAATGCCTATATTCATCCACCACAGCCTATGCATAGACAGCCATCTCCAATTTACAATAACAGGGGACCAATATCCAGAAATGAAGCTTTGCCAAGGATAATTCCAATAGCTGCATTGAACCCATACCAAAACATGTGGACAATTAAGGCTAGAGTTACATCAAAGGCAAGCCTCAGGCAGTACAACAATGCCAGAGGTGATGGCAAAGTGTTTTCTTTTGATCTTCTTGACTCTGATGGTGGAGAAATTCGTGCAACTTGCTTTAATGCAGTGGCTGAACAGTTCTATCGTCTAGTTGAAGTTGGTAAAGTATATCTGATTTCCAGGGGGAGTATAAAGCCGGCTCAAAAAAATTTTAATCATCTTCCTAATGATCAAGAACTGACCCTTGATCTGACATCCATCATACAGCCATGCCTTGATGATGACAAATCAATTCCAATGCGTCTTTTTAATTTTCGTCCAATTAGTGATGTTGAAAGCATGGAAATTTCGAGTGTTGTGGATGTGATTGGTGTGGTATTTTCTGTCAGTCCTACAACCTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAGCCCTCCAGTTGAAGGACATGTCTGGCTGTAGTGTTGAATTAACCCTATGGGGAGATTTTTGTAGTGCAGAAGGACAACGGTTGCAGAATACTTGTGACTCAGGTGCATTTCCAGTTTTGGCTGTGAAAGCTGCCAGGGTAAATGAATTCAATGGGAAGGCCCTTGGGACCATAGTCAATAGTCAGCTATTTATAGATCCTGATTTTCCTGAGGCTTACAGGTTGAAAGAATGGTTTGACAAGGAAGGGAGGAACGTACCAACTATTTCTATTTCCAGAGAATCATTCAATGCTGGTAAGAATGATATGAGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATTAGCATCTGTGCAAGTGTTTCATTCATTAAGGCCGACTCATTCTGCTATACAGCCTGTCCCATCATGATAGGTGATAGGAAATGTAGCAAAAAGGTGTCCAATAATGGAGACGGAAAGTGGAGGTGTGATAGATGTGACCAGTATGTTGATGCATGTGAATATAGGTATATACTGCAACTCCAAATACAGGACCACACTGGGCTAACATGGGTAACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGCTTACCTGCCAAAGATCTTTATTATATGAAATATGAAGATCAGGACGATGAAAGATTTGCACAAGTCATCCGTAAGGTTCTTTTTACTAAATACATATTCAAGTTAAAAGTTAAGGAAGAGACATTTGGTGATGAACAACGTGTGAAGTCAACAGTGGTGAAAGCAGAGAAGGTTAACTTTTCATCTGAATCAAGATTTCTTTTGGATTTGATTGATAAGCTTAAAGCTGAAAAGGTAGAAGGTATCAATCCTCATTCTCTAATCAGTAATACTGGACATCAGAGTGTTGGAACTGGCCTGGCCAATGCCACCAGCTATAATCCTATAAATAGCAACAGTGGTGCGAGTAGAGAATATGGGATGCCAGCAAATCAAGTGGGTCAGTATGAGCACCAATATAGGAGTTCTTTTGCTTCAGCTGGGTCTTCTAGTTCATTTATGCCTTGCAGCAATTGTGGAGGCTCTGGCCATAGCTCTATGCATTGCCCGAACATTGCAAGTTTGCCTCGACAGTCCATGGGAGGAGGGGCCTTTGCAAATAGGGTATCTTCTGGGGCAGGTGTTAGTGTTGCAACTGGTGAATGCTTTAAATGTCATCAAACTGGTCACTGGGCACGAGACTGTCCTGGTCTCAACGTAGCAGCCCCTTCAGCTTATGGAAGTAGTGTTGTTCATGGAGGACATGGGTTTGTTCAAAGGCAACAGCTTGGCGGATTTTGA 2592 0.4309 MAANLTGGAIITMCRDDFSCEDLKPVLQVIDLKLVQSQQHNNTERYRLVLSDGSHYQQGMLATQKNELVHAGRLQKGSVVKLTQFICNVVQSRKIIIIIELDMVLDRCDLIGEPVAAPRAAPASSSTDQSGANTGNPQSLTSTSPAGGNIARPNVTGPSLDHSQINHNNNGARYGAANAPPSLPKTEPRATPTLPKSGPSSGSYGEHNMGFCNPRPETPRPPQNAYIHPPQPMHRQPSPIYNNRGPISRNEALPRIIPIAALNPYQNMWTIKARVTSKASLRQYNNARGDGKVFSFDLLDSDGGEIRATCFNAVAEQFYRLVEVGKVYLISRGSIKPAQKNFNHLPNDQELTLDLTSIIQPCLDDDKSIPMRLFNFRPISDVESMEISSVVDVIGVVFSVSPTTSIMRKNGTETQKRALQLKDMSGCSVELTLWGDFCSAEGQRLQNTCDSGAFPVLAVKAARVNEFNGKALGTIVNSQLFIDPDFPEAYRLKEWFDKEGRNVPTISISRESFNAGKNDMRKTISQIKDEKLGTSEKPDWISICASVSFIKADSFCYTACPIMIGDRKCSKKVSNNGDGKWRCDRCDQYVDACEYRYILQLQIQDHTGLTWVTAFQECGEEIMGLPAKDLYYMKYEDQDDERFAQVIRKVLFTKYIFKLKVKEETFGDEQRVKSTVVKAEKVNFSSESRFLLDLIDKLKAEKVEGINPHSLISNTGHQSVGTGLANATSYNPINSNSGASREYGMPANQVGQYEHQYRSSFASAGSSSSFMPCSNCGGSGHSSMHCPNIASLPRQSMGGGAFANRVSSGAGVSVATGECFKCHQTGHWARDCPGLNVAAPSAYGSSVVHGGHGFVQRQQLGGF 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci561g0001 863 FunFam Replication protein A subunit 368 506 - -
Prci561g0001 863 CDD RPA1_DBD_A 258 360 - -
Prci561g0001 863 MobiDBLite consensus disorder prediction 193 207 - -
Prci561g0001 863 SUPERFAMILY Nucleic acid-binding proteins 256 369 IPR012340 -
Prci561g0001 863 FunFam Replication protein A subunit 255 365 - -
Prci561g0001 863 FunFam Replication protein A subunit 4 118 - -
Prci561g0001 863 FunFam Replication protein A subunit 507 698 - -
Prci561g0001 863 Gene3D - 507 698 IPR012340 -
Prci561g0001 863 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Prci561g0001 863 MobiDBLite consensus disorder prediction 119 219 - -
Prci561g0001 863 PANTHER REPLICATION FACTOR A 1, RFA1 269 679 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci561g0001 863 SUPERFAMILY Nucleic acid-binding proteins 521 698 IPR012340 -
Prci561g0001 863 SUPERFAMILY Retrovirus zinc finger-like domains 807 835 IPR036875 GO:0003676|GO:0008270
Prci561g0001 863 ProSiteProfiles Zinc finger CCHC-type profile. 819 833 IPR001878 GO:0003676|GO:0008270
Prci561g0001 863 Pfam OB-fold nucleic acid binding domain 269 357 IPR004365 GO:0003676
Prci561g0001 863 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Prci561g0001 863 MobiDBLite consensus disorder prediction 122 175 - -
Prci561g0001 863 CDD RPA1_DBD_B 390 497 - -
Prci561g0001 863 SUPERFAMILY Nucleic acid-binding proteins 374 503 IPR012340 -
Prci561g0001 863 SMART c2hcfinal6 772 788 IPR001878 GO:0003676|GO:0008270
Prci561g0001 863 SMART c2hcfinal6 818 834 IPR001878 GO:0003676|GO:0008270
Prci561g0001 863 Pfam Replication protein A OB domain 379 483 IPR031657 -
Prci561g0001 863 Pfam Zinc knuckle 818 833 IPR001878 GO:0003676|GO:0008270
Prci561g0001 863 CDD RPA1_DBD_C 524 697 IPR047192 -
Prci561g0001 863 Gene3D - 254 362 IPR012340 -
Prci561g0001 863 Gene3D - 3 117 IPR012340 -
Prci561g0001 863 Gene3D - 766 848 - -
Prci561g0001 863 Pfam Replication factor-A C terminal domain 540 691 IPR013955 -
Prci561g0001 863 NCBIfam replication factor-a protein 1 (rpa1) 235 697 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci561g0001 863 Gene3D - 368 506 IPR012340 -
Prci561g0001 863 ProSiteProfiles Zinc finger CCHC-type profile. 773 788 IPR001878 GO:0003676|GO:0008270
Prci561g0001 863 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci561g0001 1 799 Core DNA Replication Machinery Family AT5G45400 52.005 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci561g0001 K07466 - qsa:O6P43_033421 1150.96