Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci559g0003 ATGGACGTCGATGAAACTTCTAAACCCAAAGAGGAAAAGCTCTTATTGGTCATGTTAGTGGGGGCACCAGGGAGCGGCAAGTCCACTTTCTGCGAAGAAGTTATGCGTTCTTCTACTCGTCCTTGGGTTCGCGTCTGCCAGGATATCATTGGAAATGGAAAAGCAGGAAACAAAGCTCAGTGTCTAAGCAGTGCAGCTGGAGCATTGAAGGATGGAAAGAATGTATTTATTGACAGATGCAACCTTGATAGAGAACAGCGTTCAGGATTCGCAGAGCTTTGTGGACCCCAAATAGATGCTCATGCCATTGTGCTTGATCTTCCAGCAAAGCTTTGTATTTCCCGATGTGTCAAACGAACTGGGCATGAAGGCAATTTGCAGGGTGGAAAAGCTGCTGCAGTAGTGAATAGGATGCTTCAAAAGAAAGAGCTGCCTACGTTAAGTGAAGGGTTTAACCGGATAATTTTTCAGACTGATGAGATTGATGTCAAAGCAGCTATCAACACGTATAGTGCACTTGGGCCACTGGATAACCTTCCACATGGATGTTTTGGCCAGAAAAGTAAAGATGCCAAAGTTCAAGTGGATATAATGAAGTTTTTCAAAAAGGCGGAGGTCCCAGTTGTTGCTGAGTCTAGAGAGAATTGTGGTGGAAATTTTACTTCTAAAAGTAATGGGATGATAGATCCCTACCATAAAGATGTGGAAAATTTCCCATCAAATTCAGATAAAGCCAACTTAGGGTCAATGAATGTAGAAAATATCTCAGTTGGTTCCATTGTTTCTCAAGTTGATCCTACTTTCATGGGTGACGCTCCCACTTTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTTGACCATGAAAAGGCAGCTGATATTATTGTGGAGAAAGTTTTGGAGTTCTCAAATAAGCTTGTGAATGCTAGATTTGCTCTAGTTGACTTAACTCATGGTTCAAAGATTCTGTCTTTAGTTAAAGCTAAAGCTTCTAAAAAGAACTTAGATCCCAGAAAGTTTTTTACACATGTTGGGGACATTACTTGCCTTAAGTCCGCAGGGGGCTTGCACTGTGCTGTGATAGCTAATGCTGCCAACTGGCGATTGAAACCTGGAGGTGGAGGAGTTAATGCTGCAGTTTTCAAGGCTGCAGGTCCTGTCTTGGAGACTGCAACCAAAGAACGAGCACAATTGCTTTTGCCCGGGAATGCTGTTGCTGTCCCTCTACCTTCATCTTCTCCTCTGTTTGCTAGAGAGGGAGTAACCCATGTAATACATGTTCTTGGACCGAATATGAATTCACAAAGGCCAGATTGTCTCAACAATGATTACAATAAAGGCTGCAAGATTCTCAGAGAGGCTTACACTTCACTATTTGAAGCTTTTGCATCAATTGTGAAGGCTGGCACAGAGCAAAAGAGCAAGAGAGATGCTGATCATGGATCTGAAAAAAGCAAGAAATACAAGGGAAGTCAGGATGACGTTGAAGTGAACTTTACTGGTAACAAGGTCGTAAATATAGATTCAAGTAATAAAAAATTGATGCCACTGAATAAGACATGGGGATCATGGGCTCAAGCTCTTCATCTAATAGCTATGAATCCTGAAAAGCATAAGAACGAATTGCTTGAAATATCTGAAGATGTAGTTGTGCTTAATGATCTGTATCCTAAGGCACAGAAGCATGTTCTGGTGTTGGCACGAACTAGAGGCCTCGATTGCCTGGCTGATGTTCAAAATGATCACCTTCACTTACTAAAGAAGATGCATGCTGTGGGTTTAAAGTGGGCCGAGAAGTTCTTACAAGAGAATGCTTCATTGGTTTTTCGTCTTGGATATCACTCGGCTCCGTCAATGCGACAACTACATTTACATGTTATAAGTCAGGACTTTGACTCAAAACATTTGAAGAACAAGAAGCACTGGAACTCGTTCAACACCGATTTCTTTCGTGACTCGGTAGATGTAGTTGATGAGATCTCTAATAACGGGAAAGCAACCTTGAAAGATGATGACAAGTTGCTGTCCATGGAGTTGAGGTGCCATAGATGTAGAAGTGCACACCCTAACATTCCCAGGTTAAAATCCCATATTAGCAGTTGCCAAGCTTCCTTTCCTGCTTGCTTGCTTCAAAATGGTCGTTTGGTTCGTGCGCGAGGTGAAGTTAACATCAGTTCATAA 2184 0.4203 MDVDETSKPKEEKLLLVMLVGAPGSGKSTFCEEVMRSSTRPWVRVCQDIIGNGKAGNKAQCLSSAAGALKDGKNVFIDRCNLDREQRSGFAELCGPQIDAHAIVLDLPAKLCISRCVKRTGHEGNLQGGKAAAVVNRMLQKKELPTLSEGFNRIIFQTDEIDVKAAINTYSALGPLDNLPHGCFGQKSKDAKVQVDIMKFFKKAEVPVVAESRENCGGNFTSKSNGMIDPYHKDVENFPSNSDKANLGSMNVENISVGSIVSQVDPTFMGDAPTLAFPSISTSDFQFDHEKAADIIVEKVLEFSNKLVNARFALVDLTHGSKILSLVKAKASKKNLDPRKFFTHVGDITCLKSAGGLHCAVIANAANWRLKPGGGGVNAAVFKAAGPVLETATKERAQLLLPGNAVAVPLPSSSPLFAREGVTHVIHVLGPNMNSQRPDCLNNDYNKGCKILREAYTSLFEAFASIVKAGTEQKSKRDADHGSEKSKKYKGSQDDVEVNFTGNKVVNIDSSNKKLMPLNKTWGSWAQALHLIAMNPEKHKNELLEISEDVVVLNDLYPKAQKHVLVLARTRGLDCLADVQNDHLHLLKKMHAVGLKWAEKFLQENASLVFRLGYHSAPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTDFFRDSVDVVDEISNNGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQASFPACLLQNGRLVRARGEVNISS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci559g0003 727 Pfam AAA domain 16 141 - -
Prci559g0003 727 Pfam Scavenger mRNA decapping enzyme C-term binding 535 642 - -
Prci559g0003 727 SUPERFAMILY Macro domain-like 274 309 IPR043472 -
Prci559g0003 727 SUPERFAMILY HIT-like 513 686 IPR036265 -
Prci559g0003 727 Pfam Macro domain 363 444 IPR002589 -
Prci559g0003 727 SUPERFAMILY Macro domain-like 323 461 IPR043472 -
Prci559g0003 727 FunFam Transcription factor bHLH140 4 172 - -
Prci559g0003 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 161 IPR027417 -
Prci559g0003 727 ProSitePatterns HIT domain signature. 611 629 IPR019808 -
Prci559g0003 727 Gene3D - 2 172 IPR027417 -
Prci559g0003 727 FunFam aprataxin isoform X2 523 703 - -
Prci559g0003 727 SMART YBR022w_8 340 479 IPR002589 -
Prci559g0003 727 Gene3D - 524 706 IPR036265 -
Prci559g0003 727 Gene3D Leucine Aminopeptidase, subunit E, domain 1 318 467 IPR043472 -
Prci559g0003 727 PANTHER APRATAXIN-RELATED 275 702 - -
Prci559g0003 727 ProSiteProfiles Macro domain profile. 328 547 IPR002589 -
Prci559g0003 727 FunFam Transcription factor bHLH140 321 468 - -
Prci559g0003 727 Pfam C2HE / C2H2 / C2HC zinc-binding finger 647 700 IPR032566 -
Prci559g0003 727 MobiDBLite consensus disorder prediction 471 493 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci559g0003 5 723 C2H2 Transcription Factor Family AT5G01310 60.027 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci559g0003 K10863 - gmx:100786762 1063.91