Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci538g0001 ATGGCAGCAGAGACACTCCTAAGCGATTTACAGACTTCAAATCCAACATTTATTAAATCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTCCCAACTAGATTTTGTCAAGAACATCTTCCAAAGACCGCTTGTGACATGATTTTAGAGGATGAAAATGGCTCAGAATTTGACGCTGTCTTCCTTGGCAATAGAACCGGGATTAGCGGAGGCTGGAGAGGATTTGCACTGGATCATAAGTTGGATGATGGTGATGCACTTGTTTTTGAGTTAGTTGAACCTGCGAGATTTAAGATTTATATTGTCAAAGCCTTTCCAGAATCAGCTGAAGATGGACAGGAGACTTTGGATGAAGAAGCTGATACTTGTGCAGCCAAGAAGCACAAATCACAATCAAACAGGACACAAATTCTTGAACATGCTGTGCATGAAACTAAAGAATCTGCAAGTTCTCAGGAAAATAATGTTGACAATGAAATCGAGCCACAAGAGCTAAACCCAGCTAGAAATACGAGATTTTCTCAGAGAAAATCTCAGAAAGAATCTAAAGATCGTAAGCTGCTTGTTTCTGGTGGTTCAATAAAGGAAGAAAATATTGAAGAAGGGAAAATTGTATGGAGAATGCAAAAGCAGCCATGA 648 0.3981 MAAETLLSDLQTSNPTFIKSMVRSHVYSCFWLGLPTRFCQEHLPKTACDMILEDENGSEFDAVFLGNRTGISGGWRGFALDHKLDDGDALVFELVEPARFKIYIVKAFPESAEDGQETLDEEADTCAAKKHKSQSNRTQILEHAVHETKESASSQENNVDNEIEPQELNPARNTRFSQRKSQKESKDRKLLVSGGSIKEENIEEGKIVWRMQKQP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci538g0001 215 SMART B3_2 17 108 IPR003340 GO:0003677
Prci538g0001 215 MobiDBLite consensus disorder prediction 145 215 - -
Prci538g0001 215 Pfam B3 DNA binding domain 17 104 IPR003340 GO:0003677
Prci538g0001 215 Gene3D - 2 108 IPR015300 -
Prci538g0001 215 SUPERFAMILY DNA-binding pseudobarrel domain 10 106 IPR015300 -
Prci538g0001 215 MobiDBLite consensus disorder prediction 151 176 - -
Prci538g0001 215 MobiDBLite consensus disorder prediction 177 207 - -
Prci538g0001 215 CDD B3_DNA 15 106 IPR003340 GO:0003677
Prci538g0001 215 ProSiteProfiles B3 DNA-binding domain profile. 17 108 IPR003340 GO:0003677
Prci538g0001 215 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 107 IPR044837 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci538g0001 2 107 B3 DNA Binding Superfamily AT5G58280 61.321 7.69e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci538g0001 B3 5.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci538g0001 - - pcin:129297515 436.802