LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci534g0003	ATGCCCTCTTCAACAACATCCATGATTCAGCACTTCAACGAATCCTACATGTTCGGATTCCATTATCTCTCCGATGATTCTGAACATTCTTCTGCTTTAGAAGCAATCCGACAGCACCTTCTCGGCAATGAAACCGCTGACTTGCCTCCGTCTTATCCGGCAACACTTTCCGACCAGGTCCCATTGCACGGCCAGAGTTCAATGCGGAGGCCTTGGGGGAAATACGCGGCGGAGATCAGACATCCGGCTAAAAATGGTGGTAGGGTTTGGCTTGGAAGTTATGATGCAGCTGAGGATGCAGCTGTAGCTTATGACAGAGCAGCTTATGAGATGCGTGGAGCTAAAGCCAAGCTTAATTTTCCTCTCCTTGTGGGCTCCAACGTGTGGGATTCGGTTGGAGCAACTCGAAAGCACAGCCACCTCGCCATGGCCGCTGCTGCTGGCGGCGGCGGCGGCGAGCATCCTTCGAAGCTTAAGCGGATAAGGAAGAGCTAG	495	0.5253	MPSSTTSMIQHFNESYMFGFHYLSDDSEHSSALEAIRQHLLGNETADLPPSYPATLSDQVPLHGQSSMRRPWGKYAAEIRHPAKNGGRVWLGSYDAAEDAAVAYDRAAYEMRGAKAKLNFPLLVGSNVWDSVGATRKHSHLAMAAAAGGGGGEHPSKLKRIRKS	164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci534g0003	164	Pfam	AP2 domain	69	113	IPR001471	GO:0003700\|GO:0006355
	Prci534g0003	164	ProSiteProfiles	AP2/ERF domain profile.	61	121	IPR001471	GO:0003700\|GO:0006355
	Prci534g0003	164	SUPERFAMILY	DNA-binding domain	68	122	IPR016177	GO:0003677
	Prci534g0003	164	PANTHER	DNA-BINDING DOMAIN	69	137	IPR044808	GO:0003700\|GO:0009873
	Prci534g0003	164	SMART	rav1_2	69	127	IPR001471	GO:0003700\|GO:0006355
	Prci534g0003	164	MobiDBLite	consensus disorder prediction	145	164	-	-
	Prci534g0003	164	Gene3D	AP2/ERF domain	66	123	IPR036955	GO:0003700\|GO:0006355
	Prci534g0003	164	CDD	AP2	69	121	IPR001471	GO:0003700\|GO:0006355
	Prci534g0003	164	PRINTS	Ethylene responsive element binding protein signature	64	75	IPR001471	GO:0003700\|GO:0006355
	Prci534g0003	164	PRINTS	Ethylene responsive element binding protein signature	103	123	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci534g0003	25	132	AP2-EREBP Transcription Factor Family	AT2G44840	45.902	9.53e-29	104

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Prci534g0003		AP2	3.9e-07	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci534g0003	K09286		-	pcin:129297492	317.39